Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0028 ATGGGCAGTTTGGGAGCGATTTTGACGCATCCGGATGACATATACCCACTGCTGAAGCTGAAAATGGCGGTACGCCACGCCGAGAAGCAGATCCCGCCGGAGCCGCACTGGGCCTTCTGCTACACTCTGCTCCACAAGGTCTCTCGCAGCTTCGGTCTCGTCATTCAACAGCTCGGCACCGAGCTCCGCAACGCCATATGCATTTTCTATTTGGTTCTTCGAGCACTCGACACTGTTGAGGATGATACAAGCATTCGTACAGATGTCAAAGTGCCTATTCTGATAGCTTTTCATCGTCATATATATGACCGTGACTGGCATTTTGCATGTGGTACAAAGGACTACAAGGTTCTCATGGACCAATTCCATCATGTTTCAACTGCTTTTCTGGAGCTTGAAAGAGGTTATCAGGAGGCAATTGAAGACATCACCAAACGAATGGGGGCAGGAATGGCAAAATTTATTTGCAAAGAGGTGGAAACCATTGATGACTATGATGAATATTGCCACTATGTAGCAGGACTTGTTGGATTAGGATTGTCCAAGCTTTTCCATGCCTCCAAGTTGGAAGATTTGGCTTCTGATGAACTCTCCAACTCAATGGGTTTATTTCTTCAGAAAACAAATATAATCCGAGATTATCTGGAGGATATAAATGAGATCCCAAAGTCACGCATGTTTTGGCCCCGTGAGATTTGGAGTAAATATGTTAACAAACTTGAGGACTTGAAAGAGGAGGAAAACTCAATCAAAGCAGTGCAATGCTTGAATGACATGGTCACTAATGCTTTAATACATATGGAAGATTGCCTGACATACATGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCAGAGGAGTAGTAAAAATGAGGCGTGGTCTTACTGCCAAAGTTATTGACAGAACAAAAGCGATGTCTGATGTCTATGGTGCTTTCTTCGATTTTTCTTGTATGCTGAAGTCCAAGGTTGACAAGAATGACCCGAATGCTACAAAAGCATTGAGCAGGCTAGAAGCAGTACAGAAAATTTGCAGGGAATCTGGAGCCCTTACCAAAAGGAAATCCTATGTAATCAGGAGCGAACCAAGATATAATTCAGCTCTGATTGTGGCATTCTTCATCATACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAA 1242 0.4332 MGSLGAILTHPDDIYPLLKLKMAVRHAEKQIPPEPHWAFCYTLLHKVSRSFGLVIQQLGTELRNAICIFYLVLRALDTVEDDTSIRTDVKVPILIAFHRHIYDRDWHFACGTKDYKVLMDQFHHVSTAFLELERGYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASKLEDLASDELSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYVNKLEDLKEEENSIKAVQCLNDMVTNALIHMEDCLTYMSALQSPAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTKAMSDVYGAFFDFSCMLKSKVDKNDPNATKALSRLEAVQKICRESGALTKRKSYVIRSEPRYNSALIVAFFIILSIIFAYLSANRQNN* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0028 413 Gene3D Farnesyl Diphosphate Synthase 34 370 IPR008949 -
Vvi3g0028 413 Pfam Squalene/phytoene synthase 45 315 IPR002060 GO:0009058
Vvi3g0028 413 CDD Trans_IPPS_HH 38 320 IPR033904 GO:0004311
Vvi3g0028 413 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
Vvi3g0028 413 SFLD Isoprenoid Synthase Type I 36 325 - -
Vvi3g0028 413 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
Vvi3g0028 413 SUPERFAMILY Terpenoid synthases 36 366 IPR008949 -
Vvi3g0028 413 SFLD Squalene/Phytoene Synthase Like 36 325 IPR002060 GO:0009058
Vvi3g0028 413 FunFam Squalene synthase 1 34 370 - -
Vvi3g0028 413 NCBIfam squalene synthase 36 367 IPR006449 GO:0004310|GO:0008610
Vvi3g0028 413 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 405 IPR044844 GO:0004311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0028 K00801 - vvi:100265798 831.632