LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi3g0027	ATGCCCTTCAAAGCGCTCTCTCACGCATCACACTTCCATCTCCAAAACCCTGATCTCAGGCGATTCTCTCCACCTTCAACCTCATTCAGTAATAGTCCAAACACTCGCTTCCGCAACTCGCCTGCTCCGTCGCTTCTGTGCATTTCTCCGGCTGCAAATGATCGCCGGCATCGTCTAACGGCTTTGTGCAAAAGCTCCAGTCAGGAGGTTCTCGGTGAGACACAGGATGTTGCGAGCGAAAATGGCGGGAATGGCGCTCTGGTTTCGTCGTTCGAAGAAGAAGATGTTGGAGAAGGAGAAGAGGAAGCGGTGGAGGTTGTTGTTGGATCGAAGAGGAAAGAATTCGCTGCGGATCAGAGCATTTTGAATCAGATGAAGAAGATTGTGATGTTTTCGGGGCCAGCCACTGCGCTGTGGATATGTGGGCCTTTGATGAGTCTCATTGACACGGCGGTGATTGGTCAGGGGAGCTCGCTTGAGCTGGCTGCTTTAGGACCTGGAACTGTTCTTTGCGACAATATGAGTTATGTGTTCATGTTTCTTTCTATTGCTACTTCAAATATGGTTGCCACTGCGCTGGCTAGAAAGGATAAAAAAGAAGTGCAACATCAGATATCCATCTTGCTCTTTATTGGTTTAGCTTGTGGTGTGCTGATGCTTTTCTTCATGAAGTTCCTGGGTGCATGGGCATTAACTGCCTTTACTGGACCAAAGAATGCGCATCTTGTACCTGCAGCCAACACCTATGTTCAGATCCGAGGATTAGCATGGCCTGCGGTTCTTATTGGGTGGGTTGCTCAAAGTGCAAGTCTTGGGATGAAAGATTCTTGGGGACCTTTGAAGGCTTTGGCGGTTGCAAGTGCTGTAAATGTCACTGGCCATGTGGTGCTGTGCACTTTACTAGGTTATGGTATAGCAGGTGCAGCATGGGCAACAATGGTGTCACAAGTTATTGCAGCTTATATGATGATTGAAGCTCTAAACAAGAAAGGATTCAAAGCTTACTCCATATCTGTTCCATCACCCAGCGAACTTCTGCAAATATTTAAGCTTGCTGCTCCTGTGTTTGTGACAATGGTGTCAAAGGTGTCCTTCTACTCTCTTATTATATATTTTGCTACCTCTATGGGTACACACACTGTTGCTGCTCATCAGGTCATGATTCAAATGTACAGCATGTGTGTGGTATGGGGTGAGCCTCTCTCTCAAACCGCCCAATCATTTATGCCTGAGTTGATGTATGGAGTTGATCGAAGTTTGTCAAAGGCCCAAACGCTGTTGAAGTCTCTTTTGATTATTGGAGTCATCCTTGGATTGTTATTAGGAATTGTTGGAACATCTGTTCCTGCGCTGTTCCCCAATATCTTCACACCCGACCCCTCCGTCATGCAGCAGATGCACAAGGTGTTGATTCCTTTCTTTTTTGCTTTAGCCGTGACACCCTGTACACATAGTCTCGAGGGCACACTGCTGGCTGGACGTGATCTCAAGTTTTTGAGTTTATCAATGAGCGGATGCTTTACTTTGGGAGCCATTATTCTATGGCTTGTGAGCAATTCAGGATATGGTTTGCCAGGCTGCTGGTGTGCTCTCGTAGGATTCCAATGGGCTCGGTTCTTTCTTTCTCTCCGCCGCCTTCTTTCTCCCAATGGTGTACTTTTTTCAGAGGAACGGTATGAACTGGGAAAACTGAAAGCCGCGTAG	1704	0.4701	MPFKALSHASHFHLQNPDLRRFSPPSTSFSNSPNTRFRNSPAPSLLCISPAANDRRHRLTALCKSSSQEVLGETQDVASENGGNGALVSSFEEEDVGEGEEEAVEVVVGSKRKEFAADQSILNQMKKIVMFSGPATALWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYVFMFLSIATSNMVATALARKDKKEVQHQISILLFIGLACGVLMLFFMKFLGAWALTAFTGPKNAHLVPAANTYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLKALAVASAVNVTGHVVLCTLLGYGIAGAAWATMVSQVIAAYMMIEALNKKGFKAYSISVPSPSELLQIFKLAAPVFVTMVSKVSFYSLIIYFATSMGTHTVAAHQVMIQMYSMCVVWGEPLSQTAQSFMPELMYGVDRSLSKAQTLLKSLLIIGVILGLLLGIVGTSVPALFPNIFTPDPSVMQQMHKVLIPFFFALAVTPCTHSLEGTLLAGRDLKFLSLSMSGCFTLGAIILWLVSNSGYGLPGCWCALVGFQWARFFLSLRRLLSPNGVLFSEERYELGKLKAA*	568

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi3g0027	567	CDD	MATE_DinF_like	124	548	IPR044644	-
	Vvi3g0027	567	MobiDBLite	consensus disorder prediction	20	37	-	-
	Vvi3g0027	567	Pfam	MatE	140	291	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Vvi3g0027	567	MobiDBLite	consensus disorder prediction	16	37	-	-
	Vvi3g0027	567	NCBIfam	MATE family efflux transporter	135	528	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Vvi3g0027	567	PANTHER	PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED	67	551	IPR044644	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi3g0027	Vvi-Chr3	398948	406451	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi3g0027	K03327		-	vvi:100265746	1052.35