Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0026 ATGCAGTTCAAAACCCTAGCTCGTCCTTCCCAAATCCACCTCCAAAACCCTAGCCTCAGACGATTCTCTCCACCTCCATTCTTCTTCAATCAATGCCTGAAAGCTCACTCTCACACCTCTCTCTCTTTGCAAAGTTTACGAATTTCTTCGGTGATGAATCGTGGTAGTCGGTTTGCAATTGGTTGTATTGGTTCCAGTGAAGTTGTTGGAGACGGAGTTGAATTTGTGGCTGGAAATGAGGAAAATGTCGGTTCGGTTTCATTGTTGGAAGAGGATGAGGTGGAGGTGGAGGTTGTTGGAGTGGGAAAACAAGAGTTCGGGGTGAATCAGAGTATATGGGAACAGATGAAGGAGATCATGATGTTTACGGGGCCTGCCACGGGTCTGTGGATATGTGGACCTTTGATGAGTCTTATTGATACAGCTGTTATTGGTCAGGGAAGCTCGGTTGAGCTTGCTGCTTTGGGCCCAGGCACAGTTGTATGTGATTATATGAGTTATGTTTTCATGTTCCTTTCTATTGCTACTTCCAATATGGTTGCGACTTCACTTGCTCGACAGGATAAAAATGAAGTGCAACATCAGATATCTACCTTGCTCTTTGTTGGGTTTACCTGTGGTGTGCTGATGCTCCTTTTTACAAAATTCCTGGGTGCATGGGCACTAACTGTTTTTACGGGGCCAAAGAATGCTCATATTGTACCTGCGGCAAATGTATATGTTCAGATTCGGGGCTTAGCATGGCCAGCAGTTCTTGTTGGATGGGTTGCTCAAAGTGCAAGTCTTGGCATGAAAGATTCATGGGGACCTTTGAAGGCTTTGGCAGTTGCCAGTGCTATAAATGGCATCGGTGATATTGTCCTTTGCAGTTTCTTAGGCTATGGTATTGCTGGTGCAGCATGGGCAACGATGGTGTCACAAGTCATTGCTGGTTATATGATGATTGAAGCTCTGAACAAGAAAGGATATAATGCTTTCGCCTTCTCTGTTCCATCACTTGATGAATTTGTGCAGATATTGGGGCTTGCTGCTCCAGTGTTTGTAACAATGATGTCAAAGGTGGCTTTCTACTCTTTCCTTATATATTTTGCTACATCTATGGGCACACACACTCTTGCTGCTCATCAGGTCATGAGTCAATTGTACAGCATGTGTACAGTTTGGGGTGAGCCTCTCTCACAAACCGCACAATCATTCATGCCTGAGTTGATATATGGAGTCAATCGAAATCTGGCGAAGGCCCGAATGCTGCTGAAGTCACTTTTGATTATGGGAGCTTTAGTTGGATTGACACTCGGAACAATTGCGATAGCTATTCCATGGCTATTCCCTAATATTTTTACACATGATGGTGAGGTCATACATGAGGTTAGCTCTGTCCCCTCCTCTCCCCCTTTGTCATTATAA 1407 0.4456 MQFKTLARPSQIHLQNPSLRRFSPPPFFFNQCLKAHSHTSLSLQSLRISSVMNRGSRFAIGCIGSSEVVGDGVEFVAGNEENVGSVSLLEEDEVEVEVVGVGKQEFGVNQSIWEQMKEIMMFTGPATGLWICGPLMSLIDTAVIGQGSSVELAALGPGTVVCDYMSYVFMFLSIATSNMVATSLARQDKNEVQHQISTLLFVGFTCGVLMLLFTKFLGAWALTVFTGPKNAHIVPAANVYVQIRGLAWPAVLVGWVAQSASLGMKDSWGPLKALAVASAINGIGDIVLCSFLGYGIAGAAWATMVSQVIAGYMMIEALNKKGYNAFAFSVPSLDEFVQILGLAAPVFVTMMSKVAFYSFLIYFATSMGTHTLAAHQVMSQLYSMCTVWGEPLSQTAQSFMPELIYGVNRNLAKARMLLKSLLIMGALVGLTLGTIAIAIPWLFPNIFTHDGEVIHEVSSVPSSPPLSL* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0026 468 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 109 460 IPR044644 -
Vvi3g0026 468 Pfam MatE 133 281 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi3g0026 468 CDD MATE_DinF_like 115 456 IPR044644 -
Vvi3g0026 468 NCBIfam MATE family efflux transporter 127 459 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0026 Vvi-Chr3 388734 396945 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0026 K03327 - vvi:100243426 860.522