Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0022 ATGGCGGCCTCGTCCTCGCGCGGCCGGAGCAGCTCCCCGTTTCATTACCGGAAACCGTCGAGTCCGTACTCGTCATCCTCGTCGTCGTCGTCGTTTATGAATGGAAAGCTTATGCCTCGATCGTGCTCGTCGTCGGCCTCTTCATTCCTCAACAACTCCGGCAATGGACTCGGCTCCAGATCCATAACGCCGAGCAGAGGCCGTGTTGACTCAATGTACGCCGGTCCGCGCGGATACGGCAGTCGAACGCCGGTGGCGTTCGCGTCGGATGAGTTGATTGGGGAGCTGATCGATGTGCCGAGGTCCGGGGATAGCATTTCGGTGACTATTCGGTTTAGGCCTTTGAGTGAGAGGGAGTTTCAGCGGGGAGATGAGATCGCTTGGTTTGCCGACGGGGATAAGATTGTTCGAAATGAGTATAATCCAGCTACAGCTTATGCATTTGATAGAGTTTTTGGACCATCTACTGGTTCTCAGGACGTTTATGATGTGGCTGCTCGACCTGTAGTCAAGGCTGCAATGGAGGGTATCAATGGAACCGTTTTTGCTTATGGTGTTACAAGTAGTGGGAAGACACATACTATGCATGGAGACCAAAATTCTCCAGGAATTATTCCGTTGGCCATAAAGGACGTTTTCAGCATTATCCAAGATACTCCAGGACGTGAGTTCTTACTTCGGGTGTCATATCTTGAAATCTACAATGAGGTGATAAATGACTTGCTTGATCCAACCGGTCAAAATTTGCGTGTTAGAGAAGACGCACAGGGAACTTACGTTGAAGGTATTAAGGAAGAAGTTGTTTTATCTCCAGGCCACGCTCTATCTTTTATTGCTGCTGGGGAAGAGCATCGTCATGTTGGGTCCAACAATTTCAATCTGTTGAGTAGCCGTAGTCACACCATATTTACACTGATGATTGAAAGTAGCAACCATGGTGATGAATACGATGGCGTGATTTTCTCTCAACTTAATCTGATTGATCTAGCTGGATCTGAGAGCTCAAAAACAGAAACTACTGGACTGAGGAGAAAGGAAGGATCTTACATAAACAAAAGCCTTCTAACTCTTGGAACTGTAATAGGAAAACTGAGTGAGGGGAGGGCATCTCATGTTCCATATCGAGATTCTAAGCTTACTCGCCTTTTGCAATCTTCACTGAGTGGACATGGGCATGTTTCGCTCATTTGCACAGTTACCCCTGCATCGAGTAACATGGAGGAAACACATAATACACTAAAGTTTGCAAGCAGAGCAAAGCGAGTGGAAATCTATGCCTCCCGTAATAAGATTATTGATGAAAAATCTTTGATTAAGAAGTATCAAAGAGAGATCTCAACTCTCAAAGAAGAACTTGATCAGCTTAGAAGGGGAATGCTTGTTGGCGTCAGTCATGAGGAGATTATCAGCTTAAGGCAACAGTTGGAAGAAGGTCAAGTGAAGATGCAGTCGAGATTGGAGGAAGAAGAGGAAGCAAAGGCTGCTCTCATGAGTAGAATTCAGAGGCTAACCAAGCTTATACTGGTTTCTACAAAGAATACACTTCCTGGTTGCTTAGGTGATGCGGTCAGTCATCAAAGGAGTCATTCTGTCGGTGAGGATGATAAATTGGATGTTATACGTGAGGGTCCTCTGCCTGCAGAAAATGAGAATCAGAAAGACTCCCCATCTTCTGCTTTGGCAATTCCATCAGATTTGACCTGTGATTTTAGACACAGAAGATCTTCCAGTAAATGGAATGAAGAACTATCACCTGCTAGCAGTACAGTTACTGAATCTACTCAAGCGGGAGAACTTATCAGTGGTTCTGCCTGTGGTTCAAAACTGCCAACAGGTGGGATGACAATGTCTGATCAAATGGACCTCCTTGTTGAACAAGTTAAAATGCTTGCGGGAGAGATTGCATTCAGCACCAGTACTCTGAAGCGCTTGATGGAGCAGTCTGTGAATGATCCTGATGGCTCAAAAACTCAAATTCAGAACTTAGAACATGAGCTTCAAGAAAAGAAGAGGCAAATGAGGATTTTAGAACAACGCATGATGGAGACTGGTGAGGCTTCATTTGCTAATGCTTCAATGGTTGACATGCAGCAGACTGTTATGAAATTGATGACACAATGTAGTGAAAAAGGTTTTGAGCTTGAGATCAAAACTGCAGATAATCGTGTTCTCCAGGAGCAGCTGCAGAATAAGTGTGCGGAAAACATGGAATTGCAACAGAAAGTGGATCTTCTGCAACAGCAGCTTTCTTCAGGCACTGTTCAAAAATTGTCTTTGTCTTCTGAGCAGGGTGTATCAGAAGACTACATTGATGAGTTGAAAAAGAAAGTTCAGTCTCAGGAGATTGAGAATGAGAAACTAAAGCTTGAACAGGTTCAGATTTTAGAGGAGAACAGTGGACTACGGGTGCAGAACCAGAAATTGTCTGAAGAAGCTTCGTATGCAAAGGAACTAGCCTCTGCTGCTGCGGTCGAGCTGAAGAATTTGGCTGGTGAAGTTACTAAGATCTCATTACAGAATACGAAACTAGAAAAAGAATTGATTGCGGCTCGAGAGCTTGCTCATTCTCGGGGTTCGAATTTACAAGCCAGTAACAATGGTAATCGCAAGTATTCTGACAGTGCTAAACCTGGAAGGAAAGGCAGACTTCCTGGCCGAGCTAATGATATCTCTGGAGCAGTTTACGATGACTTTGAGTTGTGGAATCTTGATCCAGATGATCTAAAGATGGAACTGCAGGCAAGGAAACAACGTGAGATGGCTCTTGAGGCTGCTTTAGCTGATAAGGAACTAGTGGAAGATGATTACAGGAAAAAGCTTGAAGAGGCCAAGAAAAGGGAGTCAGCTTTGGAAAATGACTTAGCAAACATGTGGGTGCTGGTTGCTCAGTTAAAGAAAGAGGGTGGAGCCATCCCCGAGTCAAACACTGATGAGAGGCATCCCAATGAATTAGATCATGTGAATGATTTGAATCCAAAAATAGATGATAGTGACAGTAAAAATACTGTCCTTAAAGAGATGCAAGTTCCAGATGTTATGAGGCCAGCTCATGACATTCCTAAGGAAGAGCCTCTAGTTGCTCGCCTGAAGGCTCGAATGCAAGAGATGAAGGAAAAGGAGCAGAAATACCTGGGAAATGGAGATGCCAACTCCCACATCTGCAAAGTGTGTTTTGAGTCACCTACTGCAGCAATTCTTCTCCCATGCCGGCATTTTTGTTTATGTAGATCCTGCTCGCTTGCTTGTTCTGAGTGTCCAATTTGTCGCACAAAGATTGCAGATCGGTTCTTTGCATTCACTTCCTAA 3306 0.4456 MAASSSRGRSSSPFHYRKPSSPYSSSSSSSSFMNGKLMPRSCSSSASSFLNNSGNGLGSRSITPSRGRVDSMYAGPRGYGSRTPVAFASDELIGELIDVPRSGDSISVTIRFRPLSEREFQRGDEIAWFADGDKIVRNEYNPATAYAFDRVFGPSTGSQDVYDVAARPVVKAAMEGINGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSNHGDEYDGVIFSQLNLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGRASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSNMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISTLKEELDQLRRGMLVGVSHEEIISLRQQLEEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVSTKNTLPGCLGDAVSHQRSHSVGEDDKLDVIREGPLPAENENQKDSPSSALAIPSDLTCDFRHRRSSSKWNEELSPASSTVTESTQAGELISGSACGSKLPTGGMTMSDQMDLLVEQVKMLAGEIAFSTSTLKRLMEQSVNDPDGSKTQIQNLEHELQEKKRQMRILEQRMMETGEASFANASMVDMQQTVMKLMTQCSEKGFELEIKTADNRVLQEQLQNKCAENMELQQKVDLLQQQLSSGTVQKLSLSSEQGVSEDYIDELKKKVQSQEIENEKLKLEQVQILEENSGLRVQNQKLSEEASYAKELASAAAVELKNLAGEVTKISLQNTKLEKELIAARELAHSRGSNLQASNNGNRKYSDSAKPGRKGRLPGRANDISGAVYDDFELWNLDPDDLKMELQARKQREMALEAALADKELVEDDYRKKLEEAKKRESALENDLANMWVLVAQLKKEGGAIPESNTDERHPNELDHVNDLNPKIDDSDSKNTVLKEMQVPDVMRPAHDIPKEEPLVARLKARMQEMKEKEQKYLGNGDANSHICKVCFESPTAAILLPCRHFCLCRSCSLACSECPICRTKIADRFFAFTS* 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0022 1101 ProSiteProfiles Zinc finger RING-type profile. 1054 1089 IPR001841 -
Vvi3g0022 1101 MobiDBLite consensus disorder prediction 580 601 - -
Vvi3g0022 1101 CDD mRING-HC-C3HC5_CGRF1-like 1052 1089 - -
Vvi3g0022 1101 Coils Coil 659 686 - -
Vvi3g0022 1101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1027 1098 IPR013083 -
Vvi3g0022 1101 SMART kinesin_4 103 430 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g0022 1101 Coils Coil 770 797 - -
Vvi3g0022 1101 Coils Coil 472 506 - -
Vvi3g0022 1101 MobiDBLite consensus disorder prediction 856 887 - -
Vvi3g0022 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 457 IPR027417 -
Vvi3g0022 1101 SUPERFAMILY RING/U-box 1053 1093 - -
Vvi3g0022 1101 PANTHER CENTROMERE PROTEIN E 104 976 IPR027640 GO:0003777|GO:0007018
Vvi3g0022 1101 Coils Coil 431 458 - -
Vvi3g0022 1101 MobiDBLite consensus disorder prediction 857 872 - -
Vvi3g0022 1101 FunFam Kinesin-like protein KIN-7D, mitochondrial 1028 1099 - -
Vvi3g0022 1101 CDD KISc_CENP_E 105 422 - -
Vvi3g0022 1101 MobiDBLite consensus disorder prediction 49 66 - -
Vvi3g0022 1101 MobiDBLite consensus disorder prediction 49 75 - -
Vvi3g0022 1101 Coils Coil 1026 1046 - -
Vvi3g0022 1101 PRINTS Kinesin heavy chain signature 290 307 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g0022 1101 PRINTS Kinesin heavy chain signature 176 197 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g0022 1101 PRINTS Kinesin heavy chain signature 372 393 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g0022 1101 PRINTS Kinesin heavy chain signature 323 341 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g0022 1101 ProSitePatterns Kinesin motor domain signature. 322 333 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi3g0022 1101 ProSiteProfiles Kinesin motor domain profile. 105 422 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g0022 1101 FunFam Kinesin-like protein KIN-7G 97 453 - -
Vvi3g0022 1101 MobiDBLite consensus disorder prediction 972 998 - -
Vvi3g0022 1101 Gene3D Kinesin motor domain 98 453 IPR036961 -
Vvi3g0022 1101 Coils Coil 922 953 - -
Vvi3g0022 1101 Coils Coil 721 748 - -
Vvi3g0022 1101 Coils Coil 826 846 - -
Vvi3g0022 1101 Pfam Zinc finger, C3HC4 type (RING finger) 1052 1093 - -
Vvi3g0022 1101 Pfam Kinesin motor domain 111 422 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g0022 1101 MobiDBLite consensus disorder prediction 1 30 - -
Vvi3g0022 1101 MobiDBLite consensus disorder prediction 576 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0022 Vvi-Chr3 342637 357298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0022 36 1101 Miscellaneous Gene Families AT4G39050 72.516 0.0 1515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0022 K11498 - vvi:100253714 2080.45