Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0016 ATGGCTCGCTCTTTCTCTCTCCTCTTCTTTCTCCTCTTCTCTCTGTTCTTCGTCGCTTTGACTTCATCGGAGCTTCACTCCGGCGGATCCGATGACGATATCATCATCCGACAGGTAGTGCCGGAGCTCGGCGACGTTGAGGGCAGCGAGGAGGAGAATCTTTTGACCGCCGATCACCATCATTTCTCGATCTTCAAGAGGAGGTTTGGGAAATCGTACGCCTCGCAGGAGGAGCACGATTACAGGTTCAAGGTCTTCAAGGCAAACCTGCGCCGGGCGCGGAGGCACCAGCAGCTCGATCCATCGGCGACTCACGGCGTGACTCAGTTCTCTGATTTGACGCCTGCGGAGTTTCGCGGGACTTACTTAGGGTTGAGGCCTCTCAAGCTTCCTCATGATGCTCAAAAGGCTCCGATCCTTCCAACCAATGATCTTCCAGAGGATTTTGATTGGAGAGATCATGGTGCAGTTACAGCTGTCAAAAATCAGGGTTCGTGTGGGTCTTGCTGGTCTTTCAGTACTACTGGAGCGCTGGAAGGTGCTAACTTCCTTGCAACTGGGAACCTTGTTAGCCTTAGCGAGCAACAGCTTGTGGAGTGTGATCACGAGTGCGATCCAGAGGAAATGGGTTCATGTGACTCTGGATGCAATGGTGGGCTGATGAACACTGCTTTTGAGTACACACTCAAAGCTGGTGGTCTCATGAAAGAGGAGGACTATCCTTATACTGGCACTGATCGTGGGAGCTGCAAATTTGACAAGACCAAAATTGCAGCATCAGTTTCCAACTTCAGTGTTATCTCCCTTGATGAAGATCAGATTGCTGCTAATCTTGTGAAAAATGGTCCACTTGCAGTGGCCATCAATGCAGTGTTCATGCAGACATATGTTGGGGGAGTGTCATGCCCATACATATGCTCAAAGAGGTTGGACCATGGAGTGTTACTGGTGGGGTATGGTTCAGCAGGCTACGCTCCCATCCGGATGAAGGACAAGCCTTACTGGATCATAAAAAACTCATGGGGTGAGAACTGGGGAGAGAATGGATTCTACAAAATCTGCAGGGGTCGCAATGTGTGTGGTGTGGACTCCATGGTCTCAACCGTGGCTGCTGTGCATACCACCTCAAATTAG 1134 0.5062 MARSFSLLFFLLFSLFFVALTSSELHSGGSDDDIIIRQVVPELGDVEGSEEENLLTADHHHFSIFKRRFGKSYASQEEHDYRFKVFKANLRRARRHQQLDPSATHGVTQFSDLTPAEFRGTYLGLRPLKLPHDAQKAPILPTNDLPEDFDWRDHGAVTAVKNQGSCGSCWSFSTTGALEGANFLATGNLVSLSEQQLVECDHECDPEEMGSCDSGCNGGLMNTAFEYTLKAGGLMKEEDYPYTGTDRGSCKFDKTKIAASVSNFSVISLDEDQIAANLVKNGPLAVAINAVFMQTYVGGVSCPYICSKRLDHGVLLVGYGSAGYAPIRMKDKPYWIIKNSWGENWGENGFYKICRGRNVCGVDSMVSTVAAVHTTSN* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0016 377 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 59 363 IPR013128 GO:0008234
Vvi3g0016 377 Pfam Cathepsin propeptide inhibitor domain (I29) 62 118 IPR013201 -
Vvi3g0016 377 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 310 320 IPR025660 -
Vvi3g0016 377 Gene3D Cysteine proteinases 42 370 - -
Vvi3g0016 377 SUPERFAMILY Cysteine proteinases 60 369 IPR038765 -
Vvi3g0016 377 FunFam Cysteine protease RD19A 34 370 - -
Vvi3g0016 377 CDD Peptidase_C1A 146 369 IPR039417 -
Vvi3g0016 377 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 334 353 IPR025661 -
Vvi3g0016 377 PRINTS Papain cysteine protease (C1) family signature 312 322 IPR000668 GO:0006508|GO:0008234
Vvi3g0016 377 PRINTS Papain cysteine protease (C1) family signature 163 178 IPR000668 GO:0006508|GO:0008234
Vvi3g0016 377 PRINTS Papain cysteine protease (C1) family signature 334 340 IPR000668 GO:0006508|GO:0008234
Vvi3g0016 377 SMART Inhibitor_I29_2 62 118 IPR013201 -
Vvi3g0016 377 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 163 174 IPR000169 -
Vvi3g0016 377 Pfam Papain family cysteine protease 145 368 IPR000668 GO:0006508|GO:0008234
Vvi3g0016 377 SMART pept_c1 145 370 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0016 Vvi-Chr3 256923 259832 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0016 K01373 - vvi:100233049 755.362