Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0013 ATGATGAGGCCGTCTTCTTCTTCTTCCTCCTCTTCTGTTGGGATTGTTTTTGCTGTTTTGGGTTTGGCGTTGAATGCCGCAGTGTTATGTAATGGAGGAATCACTAGTAGTTTTGTGAGGCAGGCGGAGAAAAGCGTTGATATGCCTCTTGACAGCGATGTCTTTGCTGAGCCTCCCGGCTATAATGCCCCTCAACAGGTTCATATAACACAAGGAGACCATTCGGGGAAGGCAGTGATCGTGTCATGGGTCACCATGGCTGAACCAGGTTCAAATACAGTGCTCTACTGGAGTGAAAAATCCAAGGTCAAAATGCAAGCAGAGGCATCCGTAGTAACCTATAAATATTACAATTACGCTTCTGGTTACATTCATCACTGCACCATCCGGAATTTGGAGTTCGACACTAAATATTACTATGAGGTTGGATCTGGACACGTTAGGAGGAAATTTTGGTTTGTGACTCCCCCTGAAGTTGGCCCGGATGTTCCATATACTTTTGGTCTTATAGGTGATCTTGGTCAGACTTATGATTCAAATATGACGCTTACCCATTATGAATTAAACCCAGCAAAAGGAAAAACAGTACTGTATGTTGGGGACCTCTCTTACGCTGACAACTACCCAAACCACGATAATGTTAGGTGGGATACATGGGGTAGGTTTGTTGAAAGAAGCGCTGCTTATCAACCTTGGATATGGACCACAGGAAACCACGAGATTGATTTTGCCCCTGAGATTGGTGAATTTGAACCCTTTAAGCCTTTTACTCACCGGTATCCAGTCCCTTTCAGAGCATCAGATAGCACCTCTCCCTCTTGGTACTCCGTTAAGAGGGCTTCAGCATATATCATTGTATTGGCTTCTTACTCAGCATACGGGAAGTACACTCCTCAATATGAATGGCTCCAACAGGAGCTACCCAAAGTTAACAGGACAGAGACACCATGGTTGATTGTTCTTGTGCATTCCCCATGGTATAACAGTTACAACTATCATTATATGGAAGGGGAAACCATGAGAGTCATGTTTGAGTCATGGTTTGTAGAGTACAAAGTTGATGTTGTGTTTGCTGGTCATGTTCACGCATACGAAAGATCTGAACGTGTATCCAACATTGCATACAATATCATCAATGGCATGTGCACTCCTGTAAAGGACCAGTCTGCACCCGTATACATAACCATTGGTGATGGAGGAAACATCGAAGGCTTGGCAAACAACATGACAGAGCCACAGCCAAACTACTCTGCATACCGAGAAGCCAGTTTTGGACACGCTAGTTTTGATATCAAGAACCGAACCCATGCTTATTACAGTTGGCACCGGAATGAAGATGGATATGCTGTGGAAGCTGATTCTATGTGGTTTTTCAACAGATACTGGCACCCGGTTGATGAATCCTCAAGCTCATGA 1416 0.4421 MMRPSSSSSSSSVGIVFAVLGLALNAAVLCNGGITSSFVRQAEKSVDMPLDSDVFAEPPGYNAPQQVHITQGDHSGKAVIVSWVTMAEPGSNTVLYWSEKSKVKMQAEASVVTYKYYNYASGYIHHCTIRNLEFDTKYYYEVGSGHVRRKFWFVTPPEVGPDVPYTFGLIGDLGQTYDSNMTLTHYELNPAKGKTVLYVGDLSYADNYPNHDNVRWDTWGRFVERSAAYQPWIWTTGNHEIDFAPEIGEFEPFKPFTHRYPVPFRASDSTSPSWYSVKRASAYIIVLASYSAYGKYTPQYEWLQQELPKVNRTETPWLIVLVHSPWYNSYNYHYMEGETMRVMFESWFVEYKVDVVFAGHVHAYERSERVSNIAYNIINGMCTPVKDQSAPVYITIGDGGNIEGLANNMTEPQPNYSAYREASFGHASFDIKNRTHAYYSWHRNEDGYAVEADSMWFFNRYWHPVDESSSS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0013 471 SUPERFAMILY Purple acid phosphatase, N-terminal domain 45 157 IPR008963 GO:0003993|GO:0046872
Vvi3g0013 471 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 63 159 - -
Vvi3g0013 471 SUPERFAMILY Metallo-dependent phosphatases 161 467 IPR029052 -
Vvi3g0013 471 Pfam Iron/zinc purple acid phosphatase-like protein C 390 449 IPR025733 -
Vvi3g0013 471 Pfam Calcineurin-like phosphoesterase 166 364 IPR004843 GO:0016787
Vvi3g0013 471 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 160 468 - -
Vvi3g0013 471 Gene3D - 63 159 - -
Vvi3g0013 471 PANTHER ACID PHOSPHATASE RELATED 18 458 IPR039331 GO:0003993
Vvi3g0013 471 Gene3D - 160 469 IPR029052 -
Vvi3g0013 471 Pfam Purple acid Phosphatase, N-terminal domain 64 151 IPR015914 GO:0003993|GO:0046872
Vvi3g0013 471 CDD MPP_PAPs 161 459 IPR041792 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0013 Vvi-Chr3 155971 158858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0013 122 447 Miscellaneous Gene Families AT1G13900 26.810 2.33e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0013 K22390 - vvi:100260651 984.556