Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0011 ATGATCCATGTCCAGAATAAGAACTCTTCACACTTTGACTGGATACCGAGCAATGTTAAATCAAGCCTTTATGACACTCCACCTGGAGGCCTTTCCATGGCCCCAATCTTCATTGGTAACTCTACTTCAATCCAAGAGATGTTCAAGCGGGTGAGCGAGCAATTCACTGCCACGTTCAGGAGGAATGCTTTCTTGCATTGGTGCACTAGGGAAAGCATGGACAAAATGGAGTTCACTGAAACTGAGAGCAATATGAATGGCTTTGTGTCTGAAAATCAGTAG 282 0.4433 MIHVQNKNSSHFDWIPSNVKSSLYDTPPGGLSMAPIFIGNSTSIQEMFKRVSEQFTATFRRNAFLHWCTRESMDKMEFTETESNMNGFVSENQ* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0011 93 PANTHER TUBULIN 3 92 IPR000217 GO:0005874|GO:0007017
Vvi3g0011 93 PRINTS Beta-tubulin signature 17 40 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi3g0011 93 PRINTS Beta-tubulin signature 82 93 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi3g0011 93 PRINTS Beta-tubulin signature 47 58 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi3g0011 93 Pfam Tubulin C-terminal domain 3 52 IPR018316 -
Vvi3g0011 93 Gene3D Helix hairpin bin 44 93 IPR023123 -
Vvi3g0011 93 SUPERFAMILY Tubulin C-terminal domain-like 6 91 IPR008280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0011 Vvi-Chr3 138993 139274 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0011 K07375 - csin:114266413 142.51