Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0010 ATGGCGGAGGAGACGATCGAGAAGAGCAGTTCATCAGAAGAGGAGAACAACAAGGCAGTGGATCCAACTTTTTTCAGCTGTTTGCTTCAGCCTTCGAGTGCTGATTCGGATCCACAGTACATTGGAATTCGTCGTCTTCTTCTCCGCCGGAAGGCCGAGTCCGGTGTTCATCGCCGGAAGGATTGGAGATGCAATGGAAAAGGCTATGTCGCATACCGGAATTACATTCGCAGGCCGAGGAATTGGGAAAGTTTGCATGCACCAAGCCACTCAAGCACTCCTGGTCAAAGTGGGCGATGGATTCCGTCTCCAGCTCCACTCTCCCTTTTGTTTGAGGTGGACAGCTGGAGTTCCAGCAGGGACCTACGAAGTGGCTATCAAGCTTCAAGTCACAGGACCAGTTTCAGCTCAAGTGCAAGTGACAACGATCCCCCAGTTCGAAAGGTTGAACCTGCATATTCCTTTGTAGGAATGCATTGCATCTTTGACCAATGCAAAGCTTCAGTTTTGAAGTTTGGGAACAAGAGTTCTGATCTACTAGCATATGGAGCAGCAGATGGAACCTTGACAGTCTGCACTGTCTCTCAGCCTCCTTCAATCATCAAAGAATTGAGAGGGCATTCTAAAGATGTGACAGATTTTGACTTCTCATCCAACAATCAGTACATTGCATCCTCATCAATGGATAAAAGTGTCAGAGTATGGGAGATATCAAAAGGCCTTTGTATTCGAGTAATATATGGAATCTCTTCACAATTGTGTATTCGTTTTCATCCTGTGAATAACAACTTCCTCTCAGCTGGCAATGCAAACAGAGAAATCACTGTTTTCAATTTCAGCACTGGAAGAGTTATTAATAAAGCAGTTTTTGATGATGCGGTCACGGCTGTGGACCATGATCACACTGGTCAACTTATTTTTTGTGGGGACGCACAGGGATGTATATACACAGTAAATATGAACTCTCGCACAGGATCATTATCCCGTTCTCATCGCAATCGGAGTAGCAACAATCGTAAATCTCCGGTCACAACTGTTCAGTACCGAAGTTTCTCTCTGCTGGCTCGGGGCCCTGTATTGCTGACATGTACTCAAGATGGAAGTTTGTCCTTTTTCAGTGTTGCTCTGGAAATACAGGGTTATTTGACTCCTCGTTGCTCACTCAAATTGACACCACGAGTGCACAGCATCCGCGCTTCCTTCTGCCCTCTGCTTTCCCTTGAAAAGGGAGAATACATTGTTGCTGGAAGTGAAGATTCAAATGTCTACTTCTATGATCTGACTCGGCCAAGGCATACATGTGTAAACAAGTTACAGGGTCATGGTTCTCCGGTCATTGGTGTTGCTTGGAACCATGGAGAGAACTTGCTGGCTTCATCCGATTCTGATGGTACTGTCATTGTATGGAAGAGAGCAAAGACAAGTTGA 1428 0.4566 MAEETIEKSSSSEEENNKAVDPTFFSCLLQPSSADSDPQYIGIRRLLLRRKAESGVHRRKDWRCNGKGYVAYRNYIRRPRNWESLHAPSHSSTPGQSGRWIPSPAPLSLLFEVDSWSSSRDLRSGYQASSHRTSFSSSASDNDPPVRKVEPAYSFVGMHCIFDQCKASVLKFGNKSSDLLAYGAADGTLTVCTVSQPPSIIKELRGHSKDVTDFDFSSNNQYIASSSMDKSVRVWEISKGLCIRVIYGISSQLCIRFHPVNNNFLSAGNANREITVFNFSTGRVINKAVFDDAVTAVDHDHTGQLIFCGDAQGCIYTVNMNSRTGSLSRSHRNRSSNNRKSPVTTVQYRSFSLLARGPVLLTCTQDGSLSFFSVALEIQGYLTPRCSLKLTPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLTRPRHTCVNKLQGHGSPVIGVAWNHGENLLASSDSDGTVIVWKRAKTS* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0010 475 ProSitePatterns Trp-Asp (WD) repeats signature. 223 237 IPR019775 -
Vvi3g0010 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 245 IPR001680 GO:0005515
Vvi3g0010 475 SUPERFAMILY WD40 repeat-like 174 471 IPR036322 GO:0005515
Vvi3g0010 475 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 438 475 - -
Vvi3g0010 475 Gene3D - 128 251 IPR015943 GO:0005515
Vvi3g0010 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 438 475 IPR001680 GO:0005515
Vvi3g0010 475 SMART WD40_4 281 319 IPR001680 GO:0005515
Vvi3g0010 475 SMART WD40_4 339 373 IPR001680 GO:0005515
Vvi3g0010 475 SMART WD40_4 239 278 IPR001680 GO:0005515
Vvi3g0010 475 SMART WD40_4 197 236 IPR001680 GO:0005515
Vvi3g0010 475 SMART WD40_4 431 470 IPR001680 GO:0005515
Vvi3g0010 475 SMART WD40_4 390 426 IPR001680 GO:0005515
Vvi3g0010 475 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 240 - -
Vvi3g0010 475 PANTHER WD REPEAT PROTEIN 26-RELATED 155 472 - -
Vvi3g0010 475 Gene3D - 393 475 IPR015943 GO:0005515
Vvi3g0010 475 Gene3D - 252 380 IPR015943 GO:0005515
Vvi3g0010 475 Pfam WD domain, G-beta repeat 434 470 IPR001680 GO:0005515
Vvi3g0010 475 Pfam WD domain, G-beta repeat 201 235 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0010 Vvi-Chr3 126532 137261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0010 174 287 Miscellaneous Gene Families AT5G08390 24.348 1.50e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0010 K24739 - vvi:100258922 928.702