Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0008 ATGGGAGCTATCTCAGATTCCAAGTGGTTTCTTCTGTGCATGTGGGTGTTTCTGTGTATTCAGCTGACCCAGTGTAGTGTAACCTATGACAGGAAGGCTCTTATCATCAATGGGCAGAGGAGAATTCTCTTCTCTGGGTCTATCCACTACCCCAGAAGCACCCCTCAAATGTGGGAAGGCCTCATACAGAAGGCCAAGGATGGGGGCTTGGATGCCATAGATACATATGTGTTCTGGAACCTTCATGAACCTTCTCCTGGGAAGTATAACTTTGAGGGGAGATATGATTTAGTTCGGTTCATCAAGCTGATCCAGAAAGCTGGGTTATATGTGCATCTTCGCATTGGGCCTTACATTTGTGCAGAGTGGAATTTTGGGGGTTTTCCTGTTTGGTTGAAGTTTGTTCCAGGCGTTAGCTTCAGAACAGATAATGAGCCTTTCAAGATGGCAATGCAAAGGTTCACCCAGAAAATTGTCCAAATGATGAAAAATGAGAAGTTGTTTGAGTCCCAAGGTGGCCCTATCATCATCTCTCAGATTGAGAATGAATATGGCCATGAAAGCAGGGCATTTGGAGCTCCTGGGTATGCATACCTGACTTGGGCTGCAAAGATGGCAGTTGCAATGGATACAGGGGTGCCATGGGTTATGTGCAAGGAAGATGATGCCCCTGATCCAGTGATTAACACGTGCAATGGTTTTTATTGCGACTATTTCTCTCCAAACAAACCAAATAAGCCCACACTATGGACTGAGGCTTGGTCTGGCTGGTTTACTGAATTTGCTGGCCCAATTCAACAACGGCCGGTTGAAGATTTGTCATTTGCAGTCACCCGGTTCATTCAAAAAGGGGGCTCCTTTGTTAATTACTACATGTATCATGGAGGAACCAATTTTGGAAGAACAGCTGGAGGTCCTTTCATTACCACTAGCTATGACTACGATGCTCCAATTGATGAATATGGGTTGATAAGACAACCTAAGTATGGTCATTTGAAGGAGCTCCATAAGGCTATTAAATTATGTGAACGAGCATTGTTATCTGCTGATCCTGCTGAGACTTCCTTAGGAACTTATGCAAAGGCACAAGTATTCTATTCTGAGTCTGGAGGCTGTGCAGCTTTTCTCTCAAACTACAATCCAACATCAGCTGCAAGGGTGACATTTAACAGCATGCACTACAACTTGGCACCATGGTCCATCAGCATCCTTCCTGACTGCAAAAATGTTGTCTTTAACACTGCCACAGTTGGAGTTCAAACATCCCAAATGCAAATGTTGCCAACAAATTCTGAGTTGCTCTCATGGGAGACTTTCAATGAAGATATATCTTCAGCTGATGATGATTCAACTATCACAGTTGTTGGTCTCTTGGAACAGTTAAATGTTACCAGAGATACCAGTGACTATCTCTGGTATTCAACCAGGATTGATATAAGTTCGTCTGAGTCATTTCTGCATGGAGGCCAGCATCCTACTCTCATTGTCCAGTCCACAGGCCATGCTATGCATGTATTTATCAATGGACATCTTTCAGGCTCTGCCTTTGGGACTCGGGAAGACAGGAGATTTACTTTTACAGGAGATGTCAACCTGCAGACTGGGTCAAATATAATCTCAGTACTCAGTATAGCTGTTGGACTGCCAAACAATGGGCCACATTTTGAAACATGGAGCACAGGAGTCCTAGGACCAGTTGTTCTCCATGGGCTAGATGAGGGAAAGAAGGATTTATCCTGGCAGAAATGGTCATACCAGGTTGGGCTCAAGGGAGAAGCCATGAATCTGGTTTCTCCAAATGTAATTTCAAACATTGATTGGATGAAAGGATCATTATTTGCTCAGAAACAACAGCCACTTACATGGTATAAGGCTTATTTTGATGCACCAGATGGAGACGAACCTTTGGCTTTAGATATGGGTAGCATGGGGAAAGGTCAAGTATGGATAAACGGGCAAAGCATTGGAAGATATTGGACTGCTTATGCCAAAGGTAATTGCAGTGGGTGCAGTTACTCTGGGACGTTCCGAACTACAAAATGCCAATTTGGTTGTGGTCAACCAACTCAAAGATGGTACCATGTTCCTCGGTCTTGGTTGAAGCCAACCCAAAATCTATTGGTACTTTTTGAGGAACTTGGTGGGGATGCATCAAAGATTTCTTTCATGAAGAGATCTGTCACAACTGTATGTGCTGAAGTCTCTGAGCATCACCCAAACATTAAGAATTGGCATATTGAAAGTCAAGAAAGACCCGAGGAGATGAGCAAGCCCAAGGTTCACCTGCATTGTGCATCTGGGCAATCCATTTCTGCTATTAAATTTGCCAGCTTTGGAACTCCATCTGGGACTTGTGGGAATTTCCAGAAAGGAACTTGTCATGCTCCAACGTCACAAGCTGTCTTAGAGAAGAAATGCATAGGACAGCAGAAGTGCTCGGTAGCAGTATCAAGCAGTAACTTTGCAAACCCATGTCCAAACATGTTCAAGAAATTGTCTGTGGAAGCTGTTTGTGCCCCTAGCACTACGAGTAATGCCTGA 2541 0.4396 MGAISDSKWFLLCMWVFLCIQLTQCSVTYDRKALIINGQRRILFSGSIHYPRSTPQMWEGLIQKAKDGGLDAIDTYVFWNLHEPSPGKYNFEGRYDLVRFIKLIQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVPGVSFRTDNEPFKMAMQRFTQKIVQMMKNEKLFESQGGPIIISQIENEYGHESRAFGAPGYAYLTWAAKMAVAMDTGVPWVMCKEDDAPDPVINTCNGFYCDYFSPNKPNKPTLWTEAWSGWFTEFAGPIQQRPVEDLSFAVTRFIQKGGSFVNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHKAIKLCERALLSADPAETSLGTYAKAQVFYSESGGCAAFLSNYNPTSAARVTFNSMHYNLAPWSISILPDCKNVVFNTATVGVQTSQMQMLPTNSELLSWETFNEDISSADDDSTITVVGLLEQLNVTRDTSDYLWYSTRIDISSSESFLHGGQHPTLIVQSTGHAMHVFINGHLSGSAFGTREDRRFTFTGDVNLQTGSNIISVLSIAVGLPNNGPHFETWSTGVLGPVVLHGLDEGKKDLSWQKWSYQVGLKGEAMNLVSPNVISNIDWMKGSLFAQKQQPLTWYKAYFDAPDGDEPLALDMGSMGKGQVWINGQSIGRYWTAYAKGNCSGCSYSGTFRTTKCQFGCGQPTQRWYHVPRSWLKPTQNLLVLFEELGGDASKISFMKRSVTTVCAEVSEHHPNIKNWHIESQERPEEMSKPKVHLHCASGQSISAIKFASFGTPSGTCGNFQKGTCHAPTSQAVLEKKCIGQQKCSVAVSSSNFANPCPNMFKKLSVEAVCAPSTTSNA* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0008 846 FunFam Beta-galactosidase 445 582 - -
Vvi3g0008 846 SUPERFAMILY Galactose-binding domain-like 401 572 IPR008979 -
Vvi3g0008 846 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 172 184 IPR019801 GO:0004553|GO:0005975
Vvi3g0008 846 Pfam Beta-sandwich domain in beta galactosidase 346 417 IPR041392 -
Vvi3g0008 846 FunFam Beta-galactosidase 749 842 - -
Vvi3g0008 846 FunFam Beta-galactosidase 291 419 - -
Vvi3g0008 846 FunFam Beta-galactosidase 590 731 - -
Vvi3g0008 846 PANTHER BETA-GALACTOSIDASE RELATED 20 750 IPR001944 GO:0004553|GO:0005975
Vvi3g0008 846 PRINTS Glycosyl hydrolase family 35 signature 286 301 IPR001944 GO:0004553|GO:0005975
Vvi3g0008 846 PRINTS Glycosyl hydrolase family 35 signature 306 322 IPR001944 GO:0004553|GO:0005975
Vvi3g0008 846 PRINTS Glycosyl hydrolase family 35 signature 37 54 IPR001944 GO:0004553|GO:0005975
Vvi3g0008 846 PRINTS Glycosyl hydrolase family 35 signature 618 632 IPR001944 GO:0004553|GO:0005975
Vvi3g0008 846 PRINTS Glycosyl hydrolase family 35 signature 58 76 IPR001944 GO:0004553|GO:0005975
Vvi3g0008 846 PRINTS Glycosyl hydrolase family 35 signature 170 185 IPR001944 GO:0004553|GO:0005975
Vvi3g0008 846 PRINTS Glycosyl hydrolase family 35 signature 249 264 IPR001944 GO:0004553|GO:0005975
Vvi3g0008 846 PRINTS Glycosyl hydrolase family 35 signature 645 661 IPR001944 GO:0004553|GO:0005975
Vvi3g0008 846 PRINTS Glycosyl hydrolase family 35 signature 113 132 IPR001944 GO:0004553|GO:0005975
Vvi3g0008 846 Gene3D - 430 569 - -
Vvi3g0008 846 Pfam Galactose binding lectin domain 762 838 IPR000922 GO:0030246
Vvi3g0008 846 FunFam Beta-galactosidase 22 342 - -
Vvi3g0008 846 Gene3D - 592 732 - -
Vvi3g0008 846 Gene3D - 746 845 IPR043159 -
Vvi3g0008 846 ProSiteProfiles SUEL-type lectin domain profile. 754 839 IPR000922 GO:0030246
Vvi3g0008 846 Gene3D Glycosidases 20 342 - -
Vvi3g0008 846 CDD Gal_Rha_Lectin_BGal 752 838 - -
Vvi3g0008 846 SUPERFAMILY (Trans)glycosidases 24 343 IPR017853 -
Vvi3g0008 846 SUPERFAMILY Galactose-binding domain-like 581 746 IPR008979 -
Vvi3g0008 846 Pfam Glycosyl hydrolases family 35 34 338 IPR031330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0008 Vvi-Chr3 111028 116884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0008 9 843 Glycoside Hydrolase AT4G36360 72.368 0.0 1333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0008 - - vvi:100257138 1765.36