Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1165 ATGAAAGAAGTAGAAACGCTGTGGGAAGAGGTCAGAGAACTGAGCCTAGGGAAGTCGGGGAGGGTGGAGCGGCTGGAATCGCCTCCGACTCCACTCCGCTTCCTGAGGGAATTCGTGTCGCCCAACAAGCCCTGTCTCATCTCCAACGCCACTCTCCACTGGCCCGCACTCTCATCTTGGTCCCACGATGACTACCTCTCACGAGCCCTATCAAACGACGTCGTCTCCCTTCACCTCACCCCAAATGGGCGAGCCGACGCCCTTGTTCCGGCTCCTTCCACATCCTCTTCCTCCCTATGCTTCGCCTCCCCTTATGTCCACCGTCTGCTCTTCCCTGAAGCTTTGCGCCTCATCCTCTCTTGCGGGAATGCCAATTCTTCAGGGACCGTTGCGTACGCGCAGCAGCAGAACGATTGCTTCCGGAGCGAGTACTCTGCGCTAGCTGCGGACTGTGAGCCGCACATACCATGGGCCTCGCAAGCCCTGGGTTGCCTCCCTGAAGCGGTCAACCTCTGGATTGGTAACCATCTATCTGAGACTTCCTTCCACAAGGATCATTACGAGAATCTCTATGCCGTTGTTTGTGGCCAAAAACATTTCCTCCTCCTTCCTCCCACCGATGTCCATCGCATGTACATTCGTCAATACCCTGCTGCACACTACTCCTTCTCCCAGGATTCTGGACAATTGAAACTGGAACTTGACAACCCCGCTAGAAACGTGCCTTGGTGCAGTGTGAATCCCTACCCTTCCCCAGAGACTAAAGATGCAGAAATCTCCCAATTTCCGTTATATTTTAATGGTCCCAAGCCGTTGGAGTGTACAGTCAAGGCTGGGGAGATTCTTTACTTGCCAAGTATGTGGTTTCATCATGTTAAACAGACTCCAGACAGCAGTGGACGCACCATTGCTATAAATTATTGGTATGATATGCAGTTTGATATCAAATATGCCTACTTCAACTTCCTGCAGTCAATTTCATACCCATCAACTTGTAATCTGAAGTTGGCAGGAACAGAATGTGAGGATTCTGGTTCTGATGTGTGTGCATGTCTTTCAAAATATGCACCAAGCAATAGTAATGCCACCCCCACTACTTCAACACCTACAGACATCTTACGCTTGATGGATGGGCTTGGCCTTCCCATCCCTCCAGATATCTACGCTTCTCTCATCAAAGAAAGCTCCACCACCGGCGACGCCACACAAGCTACCCAATTGCTTGCTCACATCAACAGGAGCGGCCTCCCACTCAGCTCAGCTTTGCTTAACCGAATCTTGCTCATGTACGTTTCATGCGGTCTCATCCACACTGCCCGTCACATGTTTGATAAAATGAACGTCCTCAACAAGAATTCCATTTCTTGGGCTATCATGCTCGCTGCTTATATGGACAATGGTTTTTATGAAGAAGCTATATTTTTGTTTGTGCAAATGATGGAGCTTCATAGCACCATCATGCTCGAACTCCCCGCATGGATTTTTATCTGCGTTCTCAAGGCATGCGTCCACACCATGAACTTGACACTGGGGAAGCAAGTCCATGGATGGTTACTAAAGGTGGGTTATGCGACCAATTTGTTTCTCAGTTGCTACTTAATCAGCTTCTATGGGAAATTCAGATGCCTGGATGATGCTGATTTTGTCTTTGATCAAACCTCAGAGCGTAATACTGTGATTTGGACTGCCAAGATGGTCAACAAGTGTCAGGGAGAGTATATGCATGAGGCGCTTGTTGCCTTTACAGAGATGGGGAGGGCCGGAGTAAAGAGGAACGAGTTCACATATTCCAGTGTTCTTAGGGCTTGTGGGAGGATGAAGGACCATGGGCGTTGCGGTCGACTGATCCATGCCAGTACAATCAAGCTTGGTTTGGAGTCAGATATATACGTGCAGTGTGGGTTGGTTGACATGTATGGAAAATGTGGGCTACTGGTAGAAGCGAGAAGGGTTTTTGAGACTGTGAGTGACACCAACAAGACAAACATTGTGTGTTGGAATGCCATGCTTACTGGATACATAAGGCATGGGTTGTATATTGAGGCAATCAAATTTCTTTATCAGATGAAGGCAGCTGGAATTCAACCCCAAGAATCACTCCTTAATGAGCTCAGGATTGCTTGTGGGAGTACTACTCTTGAAAACAAGACTGATGGAATGCAGATATAA 2169 0.4846 MKEVETLWEEVRELSLGKSGRVERLESPPTPLRFLREFVSPNKPCLISNATLHWPALSSWSHDDYLSRALSNDVVSLHLTPNGRADALVPAPSTSSSSLCFASPYVHRLLFPEALRLILSCGNANSSGTVAYAQQQNDCFRSEYSALAADCEPHIPWASQALGCLPEAVNLWIGNHLSETSFHKDHYENLYAVVCGQKHFLLLPPTDVHRMYIRQYPAAHYSFSQDSGQLKLELDNPARNVPWCSVNPYPSPETKDAEISQFPLYFNGPKPLECTVKAGEILYLPSMWFHHVKQTPDSSGRTIAINYWYDMQFDIKYAYFNFLQSISYPSTCNLKLAGTECEDSGSDVCACLSKYAPSNSNATPTTSTPTDILRLMDGLGLPIPPDIYASLIKESSTTGDATQATQLLAHINRSGLPLSSALLNRILLMYVSCGLIHTARHMFDKMNVLNKNSISWAIMLAAYMDNGFYEEAIFLFVQMMELHSTIMLELPAWIFICVLKACVHTMNLTLGKQVHGWLLKVGYATNLFLSCYLISFYGKFRCLDDADFVFDQTSERNTVIWTAKMVNKCQGEYMHEALVAFTEMGRAGVKRNEFTYSSVLRACGRMKDHGRCGRLIHASTIKLGLESDIYVQCGLVDMYGKCGLLVEARRVFETVSDTNKTNIVCWNAMLTGYIRHGLYIEAIKFLYQMKAAGIQPQESLLNELRIACGSTTLENKTDGMQI* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1165 722 Pfam Cupin-like domain 32 314 IPR041667 -
Vvi2g1165 722 FunFam 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 1 332 - -
Vvi2g1165 722 Gene3D Jelly Rolls 1 332 IPR014710 -
Vvi2g1165 722 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 395 710 IPR046960 GO:0003723|GO:0009451
Vvi2g1165 722 SMART cupin_9 131 324 IPR003347 -
Vvi2g1165 722 SUPERFAMILY Clavaminate synthase-like 19 328 - -
Vvi2g1165 722 NCBIfam pentatricopeptide repeat 664 696 IPR002885 -
Vvi2g1165 722 ProSiteProfiles JmjC domain profile. 131 324 IPR003347 -
Vvi2g1165 722 Gene3D Tetratricopeptide repeat domain 609 717 IPR011990 GO:0005515
Vvi2g1165 722 Gene3D Tetratricopeptide repeat domain 488 608 IPR011990 GO:0005515
Vvi2g1165 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 662 696 IPR002885 -
Vvi2g1165 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Vvi2g1165 722 Pfam PPR repeat 454 481 IPR002885 -
Vvi2g1165 722 Pfam PPR repeat 664 694 IPR002885 -
Vvi2g1165 722 Gene3D Tetratricopeptide repeat domain 370 487 IPR011990 GO:0005515
Vvi2g1165 722 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 612 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1165 Vvi-Chr2 18609801 18617173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1165 2 346 Acyl Lipid Metabolism Gene Families AT3G45880 63.295 1.24e-155 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1165 K19219 - vvi:100261355 752.666