Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1163 ATGAACCCTTTGTTTTGCCCTTTCCTCTCCTCAACATTACCCCACCCAAAGCCCCTCGTCTCTCCTTCCTTGACGACTACTAGACCATCATCTTCTCCTTATCCTCCCTTCCTTCACATCTCTGCCATCAGAAATGTTGAAGATAAACTCCACTCCACCTTTTATGCAACCCCTACAACTTCCCAATTCCCAGAGATACCAACGACGGTGATTACAGCGAAGAAACGACCAGTCCCGTCCCTTCTGGTTACCATCTTTAATGGATTGGACGATTTCATCAACAACTTCATAGGCCCTCCACTCCCACCCTCCATAGACCCAAAGCATGTGCTCTCTGGTAACTTCGCTCCCGTTGACGAGCTCCCCCCTACCGAGTGTGAGGTGATAGAGGGCTCACTCCCTCCCTGCCTCGATGGCGCTTACATCCGCAATGGCCCCAACCCCCAGTTCTACCCACGTGGCCCTCACCATCTCTTTGATGGTGATGGCATGCTTCACTCCATCCGAATATCCCATGGCCGACCCATCTTCTGCAGCCGTTACGTTAAGACTTACAAATACATCATCGAGAAACGTGCTGGCTCTCCCGTTATTCCTAACCTTTTCTCAAGCTACCGCAGCTTCGCACGCAGCGCAGTTGCCATCGCCAGACTTCTAACTGGCCAGTTTGATCCCGTCAACGGGGTTGGTCTCGCCAACACCAGCGTAGCTTTCTTCTGTGGCCATCTCTACGCACTAGCTGAGTCTGATCTCCCTTATGCCGTTCGATTGACGCCTGATGGGGATATCAAAACTCTGGGCCGCTACGATTTTGATGGGAAACTCTCCATGAGCATGACCGCGCACCCCAAGATTGATCCCAGCACCGGAGAGGCATTTGCTTTTCGATACAGCCCTGTGCGTCCATTCCTAACCTACTTCCGGTTCGATGCCCAGGGAAAGAAACAACCGGACGTCCCAATTTTCTCCTTGTCTTGTCCATCTTTCTTCCATGATTTTGCAATCACCAACAGGTACGCCATATTTCCAGATATCCAGATGTGGATGAACCCGGTGAAAATGATCATCAGAGGAGGATCGCCAGTGGGTACAGATCCCACCAAAGTACCAAGAGTTGGAATCATCCCTCGTTATGCAAAAGACGAGTCCGAGATGAGGTGGATCGACGTGCCAGGTTTCAACATAATACACGCTATTAACGCCTGGGACGAGGAGGATGGCGATGCCATTGTGATGGTGGCACCAAACATACTACCAATAGAACATGCCTTGGAGAGGATGGATTTGGTCCATGGGTCTTTAGAGAAAGTGAGGATAGATCTGAAAACGGGGACAGTGACGAGGCATCGGCTATCACAGTGGAATCTGGAATTTGCGGTGATAAACCCAGGGTACTTGGGGAAGAAGAACAGATATGTATACTCAGCAGTAGGTGATCCTTTGCCCAAAATATCAGGAATTGTGAAGCTGGACGTATCACGAAGTGATCGGCGCCAGGAGTGTATAGTGGCTAAGAGAATGTACGAGCCTGGGTGCTACGGGGGCGAACCATTCTTTGTGGCAAAGGAGCCGGACAATCCAGAGGCAGAGGAGGATGATGGGTATGTGTTGTCGTATGTACACGATGAGCAAAGCGGGAAATCAAGGTTCATAGTGATGGATGCCCAGTCTCCTGACCTTGATATTGTGGCCGCTGTGAAGCTGCCCACAAGGGTGCCTTATGGCTTCCATGGATTGTTTGTTAAAGGGTGTGATCTCAAAATGGACTGA 1770 0.5045 MNPLFCPFLSSTLPHPKPLVSPSLTTTRPSSSPYPPFLHISAIRNVEDKLHSTFYATPTTSQFPEIPTTVITAKKRPVPSLLVTIFNGLDDFINNFIGPPLPPSIDPKHVLSGNFAPVDELPPTECEVIEGSLPPCLDGAYIRNGPNPQFYPRGPHHLFDGDGMLHSIRISHGRPIFCSRYVKTYKYIIEKRAGSPVIPNLFSSYRSFARSAVAIARLLTGQFDPVNGVGLANTSVAFFCGHLYALAESDLPYAVRLTPDGDIKTLGRYDFDGKLSMSMTAHPKIDPSTGEAFAFRYSPVRPFLTYFRFDAQGKKQPDVPIFSLSCPSFFHDFAITNRYAIFPDIQMWMNPVKMIIRGGSPVGTDPTKVPRVGIIPRYAKDESEMRWIDVPGFNIIHAINAWDEEDGDAIVMVAPNILPIEHALERMDLVHGSLEKVRIDLKTGTVTRHRLSQWNLEFAVINPGYLGKKNRYVYSAVGDPLPKISGIVKLDVSRSDRRQECIVAKRMYEPGCYGGEPFFVAKEPDNPEAEEDDGYVLSYVHDEQSGKSRFIVMDAQSPDLDIVAAVKLPTRVPYGFHGLFVKGCDLKMD* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1163 589 PANTHER BETA-CAROTENE DIOXYGENASE 119 582 IPR004294 GO:0016702
Vvi2g1163 589 Pfam Retinal pigment epithelial membrane protein 117 582 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1163 Vvi-Chr2 18588968 18590737 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1163 K09840 - vvi:100252859 1199.88