Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1161 ATGGACGCCTTCTCTTCCTCCTTCCTCTCATCTACTTTCACTTTCCCTTCCCTCACAACAAGACCACCAATCGCCCCATCATCACTGCCCCAAATTCCTTCTCTTAACATCTCTGCCGTCAGAATCGAAGAAAAACAACCACAAAGCTTGACTGCAGAAACATCATCCCAGTCTTCCAAGACCCAAGTCCACAAACCTCCACCACCACCACCCCGACGAGCTGCTTTGCCAACCAGAAACATACCCAAAAAAGGAGCTGCAGAGCCGTCCCTGCCGGTCACCATTTTTAACGCACTGGACGATGTCATCAACAATTTCATAGACCCTCCACTCCGGTCCTCCGTAGACCCAAGGTACGTTCTCTCTCAAAACTTCGCCCCAGTGGAAGAGCTGCCGCCCACAGAATGTGAGGTAACAGACGGTTCGCTCCCACCATGGCTGGATGGCGCTTACATTCGCAACGGCCCCAATCCGCAGTTCCTTCCCCGTGGTCCTTATCACCTCTTTGATGGCGATGGCATGCTCCACTCCATCAGAATTTCCCAAGGCCGAGCCATTCTCTGCAGCCGTTATGTTAAGACTTACAAGTACACCATTGAGCGCCGCGCTGGCTCTCCAATTCTTCCTAATGTCTTCTCCGGATTCAACGGCCTCACTGCCTCCGCCGCGCGCGGTGCACTGTCCGCTGCCCGAATTCTTACCGGCCAGTTTAATCCCGTTAATGGCATTGGTCTCGCCAACACCAGCCTAGCTTTGTTCGGCGGCCGTCTCTACGCCTTGGGTGAATCTGATCTCCCTTACTCTTTGAGATTGAAGCCCGACGGAGATATCGAGACTCTGGGTCGGCATGATTTTGATGGGAAGCTGGTCATGAGCATGACAGCTCACCCTAAGGTAGATCCAGAGACCGGAGAGGCGTTTGCTTTCCGTTACGGGCCAGTGCCTCCATTCCTAACCTACTTCCGATTCGATGCTCAAGGGAGGAAACAACCTGATGTCCCAATCTTCTCACTGACTAGTCCATCGTTCCTCCATGACTTTGGAATCACCAAAAAATACGCCATATTTGCAGACATACAGATAGGAATGAACCCCGTGGAAATGGTCACTGGAGGCTCGCCGGTGGGTACAGTGCCGAACAAAGTACCCAGATTGGGAATCATACCACGTTACGCAAAAGATGAGTCCGAGATGAGGTGGTTCAACGTCCCGGGGTTCAATATCGTGCACTCCATCAACGCCTGGGATGAAGAAGATGCTATAATCATGGTGGCACCAAACATATTATCAGTGGAACATACCTTGGAGAGGTTGGATATGATCCATGCGTCGGTGGAGATGGTGAGAATAGACCTAAAAACAGGAATGGTGACGAGGCATCCGCTATCCACACGGAATCTGGACTTTGCGGTGATAAACCCAGGATATGTGGGGAAAAAGAACAAATACGTGTACGCAGCAGTGGGTAATCCGATGCCCAAGATATCAGGAGTGGTGAAGCTGGACGTGTCCCAAACTGAGCGCAAGGAGTGCATTGTGGGAAGCAGGATGTATGGACCAGGGTGCTATGGGGGCGAACCGTTCTTCGTGGCAAGGGAGCCAGATAATCCAGAGGCGGAGGAGGATGATGGGTACATAGTGTCGTATGTGCACGATGAGAAGAGTGGAGAGTCAAAGTTCTTGGTGATGGATGCCAAGACTCCTAATCTGGATATTGTGGCTGCCGTGAGGCTGCCTCGCCGGGTGCCTTACGGTTTCCATGGACTGTTTGTGAGGGAAAGGGACATTAAAGGACTCTGA 1800 0.5189 MDAFSSSFLSSTFTFPSLTTRPPIAPSSLPQIPSLNISAVRIEEKQPQSLTAETSSQSSKTQVHKPPPPPPRRAALPTRNIPKKGAAEPSLPVTIFNALDDVINNFIDPPLRSSVDPRYVLSQNFAPVEELPPTECEVTDGSLPPWLDGAYIRNGPNPQFLPRGPYHLFDGDGMLHSIRISQGRAILCSRYVKTYKYTIERRAGSPILPNVFSGFNGLTASAARGALSAARILTGQFNPVNGIGLANTSLALFGGRLYALGESDLPYSLRLKPDGDIETLGRHDFDGKLVMSMTAHPKVDPETGEAFAFRYGPVPPFLTYFRFDAQGRKQPDVPIFSLTSPSFLHDFGITKKYAIFADIQIGMNPVEMVTGGSPVGTVPNKVPRLGIIPRYAKDESEMRWFNVPGFNIVHSINAWDEEDAIIMVAPNILSVEHTLERLDMIHASVEMVRIDLKTGMVTRHPLSTRNLDFAVINPGYVGKKNKYVYAAVGNPMPKISGVVKLDVSQTERKECIVGSRMYGPGCYGGEPFFVAREPDNPEAEEDDGYIVSYVHDEKSGESKFLVMDAKTPNLDIVAAVRLPRRVPYGFHGLFVRERDIKGL* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1161 599 PANTHER BETA-CAROTENE DIOXYGENASE 128 592 IPR004294 GO:0016702
Vvi2g1161 599 MobiDBLite consensus disorder prediction 1 87 - -
Vvi2g1161 599 Pfam Retinal pigment epithelial membrane protein 127 591 IPR004294 GO:0016702
Vvi2g1161 599 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1161 Vvi-Chr2 18560792 18562591 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1161 K09840 - vvi:100251100 1182.93