Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1153 ATGGGGTCAAGGGTTTTGGGTGGATGCAGAGCTCTGATGGAAGCGGCCAAGGCTAATGCCAATGCCAACACCAACACCAAAGTGATAAGGCAGGGCGGTGGCATAACCAAGCCGGTTCCAGTATCCCCTCAACTGGGGAAGTTTCTAGGAGGCGTTCCTCAAGCTTCTCGCTCCCTTGCTATCAAGAAAGTCTGGGAACACATCAAACTCCACAATCTCCAGAATCCTACAAATAAGAAAGAGATTTGTTGTGATGAGAAGTTGAAGACCATATTTGATGGGAAAGACAAGGTTGGGTTTCTAGAGATCGCGAAATTGCTGTCTCCCCATTTTGTGAAAATTGGTTGA 348 0.4713 MGSRVLGGCRALMEAAKANANANTNTKVIRQGGGITKPVPVSPQLGKFLGGVPQASRSLAIKKVWEHIKLHNLQNPTNKKEICCDEKLKTIFDGKDKVGFLEIAKLLSPHFVKIG* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1153 115 ProSiteProfiles SWIB/MDM2 domain profile. 34 113 IPR003121 -
Vvi2g1153 115 SMART swib_2 35 114 IPR019835 -
Vvi2g1153 115 SUPERFAMILY SWIB/MDM2 domain 27 113 IPR036885 -
Vvi2g1153 115 Gene3D SWIB/MDM2 domain 29 115 IPR036885 -
Vvi2g1153 115 Pfam SWIB/MDM2 domain 37 111 IPR003121 -
Vvi2g1153 115 CDD SWIB-MDM2_like 39 111 - -
Vvi2g1153 115 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 23 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1153 Vvi-Chr2 18405789 18408726 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vvi2g1153 SWIB 1.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1153 - - vvi:100249480 220.32