Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1148 ATGCCTCATAGAGACAGAGGCTTCGAACAGGCCCACTTTTGTCATGTTATTTATTTCATTAAGTCTTTTGCTGCAAGACCCACCAACGTGACTGCCAGCATCGCCCATTGTTTAGCCTTCAAGATGGGTGCTCTTGCTCACTTGCCCACTTCCACCTCTCTCCTCACTGCCTATTCAAGAGCTGCAGATTTCAGCTCTTCATGGGCTCTGTTTGATGAAATTCTTTACCGGGATGTGATTCTTTGGAATGCTATGATCACTGCCTCGGTTGAAAATCAGTGTTTTGGAGTTGCAGTGAATTTGTTTGTGGAGCTGATGGGAGAAGGGGTTGGGCTTGATTCAACCACCTTGTTGATTGTTGTGTCAGCCTCATCCCACATGGGTAACTTGACACAAGGCCGAGTTCTTCATGGTATAAGCTTCAAAACTGGGTTGCTTTCGGATTCATTTTTGTGTAATGCGCTCATAGACATGTATGCAAAATGCGGTGAATTGAGCTCATCAGAGTGTGTGTTTGGAGGGATGGAATATAGGGACATAATCTCTTGGAATTCAATGATGAGAGGATGTGCTTATAATAATTATCCTAAGAAGTCCTTGTGGTATTTCAAGAAGATGGCTTATTCCAGCGAACAAGCTGATAATGTGAGCCTGACATGTGCTGTCTCAGCATCTGCACTTCTGGGAGAGCTGAGTTTTGGGCAAGTCATTCATGGGTGGGGAATCAAATTGGGTTACAAAGACATATCTCATAACTCTTTTGAGAATTCTCTTATTTCACTATATTCACAATGTAGAGATATCCAGGCTGCAGAGATATTGTTTAAAGAAATGAAATACAAGGATATCGTTTCATGGAATGCAATGCTTGATGGATTGGCCTTGAACCAGAGGATTTGGGAAGCATTTGATCTTCTCCATGAAATGCAATTATTGGGGTGTGTTCAACCTGATTCAGTTACTGTAGTTATCATCATTCCACTTTGTGCAGAGCTAATGCTCTTGAGAGAAGGGCGGGCTGTTCATGGGTTAACACTTCGGAGAGAAATGGGATTGGATTTTTCAGTTACTAACAGCCTGATTGACATGTACTCAAAGTGCAAAGATGTGAAGAGGGCTGAGCACGTGTTCAAGGCCATTCCAGAAAGAGACTTGGTCTCATGGAATGCGATGATATCTGGGTATTCCCAGAATGGGCACAGTAGAGAGGCTCAACATTTATTTAGACAACTGCTCCAATCATATTCACAGTGCAGCTTGTCAACTCTTTTGGCGATTCTCCCTTCCTGTGATTCCTCTGAATTCCTGCAGTTTGGGGAATCCATTCACTGCTGGCAGCTGAAATTGGGATTTGCAAACAATCCTCTAGCAGTTAATTCCCTCATGTTAATGTATATTAATTGTGGAGATCTTGTAGCCTGTTTCTCATTGCTACAAACAGTTTCAGCTGCAGCCGATATTGTTTGTTGGAACACTGTCATGGCTGGTTGCACTCAGAATGGCCATTTCTGGGAAGCTTTAAAAGCTTTCAACTTAATGAGGCAGGACCCTGATGTCTGTCATGATTCTGTTGCCCTCTTCAATGTTATATCAGCTTGTGGAAATCTTGAGCTGTTGTTTGCAGGGGGATCACTTCATGGTCTTGCCCTTAAAACTTTAATGGAATCCGATATTCGTGTACAGAATGCATTAATTACTATGTATGGAAGATGTGGGGAGATTGAGAATGCAAGAATAATTTTCGGGTTCAGTTGCAATCGCAATTTATGTTCATGGAATTGCATGATCTCTGCTTTTTCTCAGAACAAGGATGGTAGAAGAGCGCTAGAACTATTTTGTCATATTGAGTTTGAGCCAAATGAGATCACCATTGTTGGCATTCTCTCAGCTTGTACACAACTTGGAGTTCTAAGGCATGGGAAACAGATTCATGGTCATGTGATTCGGTCTAGGTTACAGGGAAATAGTTTTGTATCTGCAGCGCTTGAGGATATGTACAGCAACTGTGGAAGACTGGACACTGCCTTTCAAATATTTCAAAGTTCACCTGAAAGGTCAGTTGCAGCTTGGAATTCTATGATATCTGCATTCGGGTTCCATAGCAATGGTGGGAAGGCGATTGAACTCTTCCATGAAATGCGTGAGTGTGGAACTAGACCGACTAAAAGCACTTTTATAAGCCTTCTATCAGCTTGCAGCCACTCAGGGCTAGTCAATGAAGGCCTTTGGTACTATAGCAACATGTTGGAGTTGTTCAATGTGGAAGCAGACACTGAGCATCATGTGTGTATGGTTGATATGCTGGGTAGAGCAGGAAGGCTTGGTGAGGCCTATGAGTTTATCAGGCAGATGCCAACTCAACCAGAACCAGGTGTCTGGGGAGCCCTGCTGAGTGCTTGCAGCTATCATGGGGATCTCAAGATGGGGAGAGAAGTTGCAGAGCTTCTCTTTGAGCTGGAACCTGAAAATGTCGGTTATTACATTTCACTGTCGAATATGTATGTTGCTGCAGGAAGATGGAAAGATGCTGTAGAGTTGAGGAGAATAATACAGGACAAAGGATTAAAGAAGCCAGCAGCTTACAGTCTTATTGATGTTGGAATGGGGTGA 2610 0.4299 MPHRDRGFEQAHFCHVIYFIKSFAARPTNVTASIAHCLAFKMGALAHLPTSTSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEGVGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASALLGELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGYSQNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNLELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIENARIIFGFSCNRNLCSWNCMISAFSQNKDGRRALELFCHIEFEPNEITIVGILSACTQLGVLRHGKQIHGHVIRSRLQGNSFVSAALEDMYSNCGRLDTAFQIFQSSPERSVAAWNSMISAFGFHSNGGKAIELFHEMRECGTRPTKSTFISLLSACSHSGLVNEGLWYYSNMLELFNVEADTEHHVCMVDMLGRAGRLGEAYEFIRQMPTQPEPGVWGALLSACSYHGDLKMGREVAELLFELEPENVGYYISLSNMYVAAGRWKDAVELRRIIQDKGLKKPAAYSLIDVGMG* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1148 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Vvi2g1148 869 FunFam Pentatricopeptide repeat-containing protein At4g39530 337 438 - -
Vvi2g1148 869 Gene3D Tetratricopeptide repeat domain 332 436 IPR011990 GO:0005515
Vvi2g1148 869 Gene3D Tetratricopeptide repeat domain 138 232 IPR011990 GO:0005515
Vvi2g1148 869 Gene3D Tetratricopeptide repeat domain 252 331 IPR011990 GO:0005515
Vvi2g1148 869 Gene3D Tetratricopeptide repeat domain 437 539 IPR011990 GO:0005515
Vvi2g1148 869 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 744 868 - -
Vvi2g1148 869 Pfam PPR repeat family 686 733 IPR002885 -
Vvi2g1148 869 Pfam PPR repeat family 281 328 IPR002885 -
Vvi2g1148 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Vvi2g1148 869 Gene3D Tetratricopeptide repeat domain 544 647 IPR011990 GO:0005515
Vvi2g1148 869 Gene3D Tetratricopeptide repeat domain 751 865 IPR011990 GO:0005515
Vvi2g1148 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 414 IPR002885 -
Vvi2g1148 869 Pfam E motif 803 859 IPR046848 -
Vvi2g1148 869 NCBIfam pentatricopeptide repeat 488 516 IPR002885 -
Vvi2g1148 869 NCBIfam pentatricopeptide repeat 386 412 IPR002885 -
Vvi2g1148 869 NCBIfam pentatricopeptide repeat 284 318 IPR002885 -
Vvi2g1148 869 NCBIfam pentatricopeptide repeat 689 721 IPR002885 -
Vvi2g1148 869 NCBIfam pentatricopeptide repeat 591 615 IPR002885 -
Vvi2g1148 869 FunFam Pentatricopeptide repeat-containing protein chloroplastic 131 232 - -
Vvi2g1148 869 Pfam PPR repeat 488 515 IPR002885 -
Vvi2g1148 869 Pfam PPR repeat 152 179 IPR002885 -
Vvi2g1148 869 Pfam PPR repeat 358 383 IPR002885 -
Vvi2g1148 869 Pfam PPR repeat 181 206 IPR002885 -
Vvi2g1148 869 Pfam PPR repeat 386 413 IPR002885 -
Vvi2g1148 869 Pfam PPR repeat 763 785 IPR002885 -
Vvi2g1148 869 Pfam PPR repeat 591 614 IPR002885 -
Vvi2g1148 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 516 IPR002885 -
Vvi2g1148 869 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 241 336 - -
Vvi2g1148 869 Gene3D Tetratricopeptide repeat domain 648 750 IPR011990 GO:0005515
Vvi2g1148 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 686 720 IPR002885 -
Vvi2g1148 869 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 643 743 - -
Vvi2g1148 869 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 541 642 - -
Vvi2g1148 869 Gene3D Tetratricopeptide repeat domain 35 137 IPR011990 GO:0005515
Vvi2g1148 869 FunFam Pentatricopeptide repeat-containing protein 440 539 - -
Vvi2g1148 869 PANTHER OS07G0578800 PROTEIN-RELATED 586 865 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1148 Vvi-Chr2 18342284 18344893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1148 214 867 Glycoside Hydrolase AT3G49170 31.784 5.37e-102 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1148 - - vvi:100246073 1755.73