Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1142 ATGGGCTCCCAGGGTGGCTTCGGCAATTCCAAGGAGTTTTTGGATCTCGTCAAGTCCATCGGCGAGGCTCGATCCAAGGCGGAAGAGGACCGCATCGTCCTCCACGAGATCGAAACCCTCAAGCGTCGAATCGTGGAGCCGGACATCCCGAAGCGCAAGATGAAGGAGTTCATCATCCGCCTGGTGTACGTGGAGATGCTGGGTCACGATGCCTCCTTCGGCTACATTCATGCGGTCAAGATGACCCACGACGACTCCCTTCTCCTCAAGCGGACGGGGTACTTGGCGGTGACTCTATTTTTGAATGAGGATCATGATTTGATTATACTCATTGTCAATACCATTCAGAAGGATCTCAAATCGGACAATTATTTAGTGGTTTGCGCCGCGCTGAATGCGGTTTGCAAGTTGATCAATGAGGAGACTATTCCCGCGGTGCTTCCGCAGGTGGTGGAGCTACTTGGGCACTCGAAGGAAGCGGTTCGAAAGAAGGCCATCATGGCCCTACATCGGTTTTATCAGCGCTCACCGTCCTCGGTCACGCATCTCGTCTCCAATTTCAGAAAGAAGCTTTGTGATAATGATCCTGGAGTCATGGGTGCAACACTTTGCCCTCTTTTTGACCTTATTGCAGTAGATGCCAATTCTTACAAGGATTTGGTCATCAGCTTTGTGAGCATTCTTAAACAAGTAGCTGAGCGTAGATTACCGAAGACTTATGACTATCATCAGATGCCAGCTCCATTCATTCAGATCAGGTTGTTGAAAATTCTGGCATTGCTGGGCAGTGGTGATAGACAAGCAAGCGAAAACATGTATACTGTTGTGGGTGACATATTCAGGAAGTGTGATTCGACGAGTAACATAGGAAATGCTGTTCTTTATGAGTGCATATGCTGTGTTTCTTCTATATATCCAAACCCTAAATTATTAGAAGCTGCTGCTGATGTAATTTCCAGATTTTTGAAGAGTGATAGTCATAATCTAAAGTATATGGGCATTGATGCCCTTAGTAGACTGATAAAGATAAGTCCAGAAATTGCTGAACAACACCAATTGGCTGTCATTGATTGCTTAGAGGACCCAGATGATACTCTAAAGCGAAAAACCTTTGAGCTACTATATAGAATGACCAAGTCTTCAAATGTGGAAGTGATTGTTGATCGTATGATTGATTACATGATAAGCATTAATGATAATCATTACAAAACTGAAATAGCATCTCGATGTGTTGAACTGGCAGAGCAATTTGCACCAAGCAACCATTGGTTTATCCAGACCATGAATAAAGTCTTTGAGCATGCTGGAGATTTGGTCAATATTAAGGTGGCTGATAATTTGATGCGGTTGATTGCGGAGGGGTTCGGAGAGGACGATGATACTGCAGATTGTCAGCTTAGATCATCTGCTGTGGAATCGTATTTACGTATCATTGGAGAGCCAAAGCTTCCGTCTGCATTTCTTCAGGTTATTTGTTGGGTTTTGGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAAGCAATGACACTGTTAAGGCATATGCTGTTACAGCGCTGATGAAAGTATATGCATTTGAAATAGCAGCAGGAAGAAAAGTGGATATGCTACCAGAGTGTCAATCCTTGATCGAAGAACTATCAGCATCCCACTCAACAGATTTACAACAGCGTGCCTATGAATTGCAAGCAGTTGTCACCCTAGATGCTCATGCTGTTGAGATTATAATGCCATCAGATGCTAGTTGTGAAGACATTGAGGTTGATAAAAACCTTTCATTCCTTGACAGTTATGTTGAACGGTCATTAGAACAAGGGGCTCAGCCCTATATTCCTGAGAATGAGCGTTCTGGAATGATAAATATTAGTAACTTCAGAAGCCAAGATCAGCATGACACTTCTACACATACCCTTAGGTTTGAGGCCTATGAGCTCCCAAAGACTTCAGCACCACCAAGGATATCTCCTGTTTCACTCGCACCCTCAACTGAACTTGTTCCAGTACCTGAGCCATCTTATCCTGTAGAAATGCACCATGTTGCATCTGTGCCATCTGTATCAGATACAGGGTCAACGGAACTCAGGCTGCGACTTGATGGAGTTCAAAAGAAGTGGGGCAGGCCAACTTACTCTTCTCCTGCATCGTCTTCCTCGGATTCTACTTCCCATAAGGCAGTAAATGGGGTCACACAATCTGATGTGAGTAGCACTAGCACCTCAAGAACACGTGATAGCTCTTATGATTCTAGGAGTGCACAAGCTGAAATTTCTTCAGAGAAGAAGAAGCTTGCTGCTTCACTATTTGGGGGTCCTTCAAAAACAGAGAAAAGACCGTCTTCTACTAGCCACAAGGTTGCAAGGTCCACTAGTCCTGCTGTGGAGAAGTCCCAGGGGCCAAAGGCAGTGGCTTCATCTACTACTGGAGTTGTATCAGAGAAGGCAGCTCCACTTCAACAACCTCCCGACTTGCTTGATCTGGGTGAACCAACTGTTACTAGTAGTGCTTCATCTGTGGATCCATTTAAGCAATTGGAAGGGCTTCTCGACCCAACTCAAGCTACTTCAGCTGCGAATCATGGTGCTGTTGATAATACCAAAGCAGCTGATATTATGTCAATGTATTCAGAGTTCCCTCCAAGTGGGCAGAGCAGTGTTATTGCAAATCCTTTTACCACTAATGCAGGTGATGCTAATCTTATACCTGGTTTGTCAACCACGAACAAAACTGGGCATGCTAAGGGCCCAAACCCTAGAGATGCCTTAGAAAAAGACGCACTGGTGAGGCAAATGGGCGTGACCCCAATGAGCCAGAATCCCAACTTGTTCAAGGATTTGCTTGGCTAA 2889 0.4496 MGSQGGFGNSKEFLDLVKSIGEARSKAEEDRIVLHEIETLKRRIVEPDIPKRKMKEFIIRLVYVEMLGHDASFGYIHAVKMTHDDSLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLVVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRKKAIMALHRFYQRSPSSVTHLVSNFRKKLCDNDPGVMGATLCPLFDLIAVDANSYKDLVISFVSILKQVAERRLPKTYDYHQMPAPFIQIRLLKILALLGSGDRQASENMYTVVGDIFRKCDSTSNIGNAVLYECICCVSSIYPNPKLLEAAADVISRFLKSDSHNLKYMGIDALSRLIKISPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYRMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVADNLMRLIAEGFGEDDDTADCQLRSSAVESYLRIIGEPKLPSAFLQVICWVLGEYGTAGGKYSASYITGKLCDVAEAHSSNDTVKAYAVTALMKVYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELQAVVTLDAHAVEIIMPSDASCEDIEVDKNLSFLDSYVERSLEQGAQPYIPENERSGMINISNFRSQDQHDTSTHTLRFEAYELPKTSAPPRISPVSLAPSTELVPVPEPSYPVEMHHVASVPSVSDTGSTELRLRLDGVQKKWGRPTYSSPASSSSDSTSHKAVNGVTQSDVSSTSTSRTRDSSYDSRSAQAEISSEKKKLAASLFGGPSKTEKRPSSTSHKVARSTSPAVEKSQGPKAVASSTTGVVSEKAAPLQQPPDLLDLGEPTVTSSASSVDPFKQLEGLLDPTQATSAANHGAVDNTKAADIMSMYSEFPPSGQSSVIANPFTTNAGDANLIPGLSTTNKTGHAKGPNPRDALEKDALVRQMGVTPMSQNPNLFKDLLG* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1142 962 PIRSF AP4_epsilon 857 962 IPR017109 GO:0015031|GO:0030124
Vvi2g1142 962 PIRSF AP4_epsilon 1 665 IPR017109 GO:0015031|GO:0030124
Vvi2g1142 962 PIRSF AP4_epsilon 631 834 IPR017109 GO:0015031|GO:0030124
Vvi2g1142 962 Pfam Adaptin N terminal region 46 581 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vvi2g1142 962 MobiDBLite consensus disorder prediction 719 852 - -
Vvi2g1142 962 SUPERFAMILY ARM repeat 10 584 IPR016024 -
Vvi2g1142 962 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 15 798 - -
Vvi2g1142 962 Gene3D - 3 594 IPR011989 -
Vvi2g1142 962 MobiDBLite consensus disorder prediction 798 828 - -
Vvi2g1142 962 MobiDBLite consensus disorder prediction 723 768 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1142 K12400 - vvi:100249377 1847.02