Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1141 ATGGCTACTGAACCTTCCGCCGATTCCTACGTAGGCAGCTTCATCACTTTGATATCCAAGTGCGAGATTCGCTACGAGGGCGTCCTCTATTTCCTCAACGCCCAAGACTCCACCATCGGCTTGAAAAACGTAAGGTCTTATGGGACAGAGGGACGAAAGAAAGATGGCACACAAATTCCTCCAAGTGATAAAGTGTATGAATTCATTCTTTTCCGGGGAAGTGACATTAAGGATTTGCAAGTTAAGTCAACACCACCTGCTCAAAAAGAAGATCAGATTCATGATGATCCTGCTATCATTCAGTCACATTGCTCTGGCGGGCTTTCAAGTTCTCTGGCATCAGCTTCAGTTGGTGGTGGAGCTTTGACAGAATCAAGTGGTTACCAGGATGCCCCTGCTTTGGTCCATAGAGCCTATCCTGGTGCATTACCTTCATATCAATCTGGCATGCCGGTGGGTCCATTGGGCCAACCGCAAACCACTCAAATTGCTGGTGTGCCATCTCACGCCATGTCAATGTATTGGCAAGGATATAATGAAACATCAATCAGTACCTCTCATGCTCCACAGCAGCCTTCTCCTCAGGCAACATCCACAACGTCATTTCCCTCAGCATTGCCGAATGAGTTGCAGGCTCCTGAAATTCAGGCATCTCCATCTGTGAGCTTGACAAATACATTGGAATGCATTGCTCCTGCACCTTCACTTATAGCATCTGATTCTGCACCCTCACTTATACCATCTAATTCTGTGCCTTCACTTATCCCGTTGAATTCTGCGCTTTCAAAATTTTCATCTTCTCTTACTCAGGAACAGTTTTCTACTTCTTCTGATACAATGTCCTTCTTGTCTGCGAAGGCAACTCTGCCATCCTACTCTGCACCTGTAAATTCGAATATAATAAACATGTCTTCATTTCCTTCATCTTATCAAGACGTTAACACCACTGAAGCTCCAATTACTGGTAAAATAGTTTCTGATCTGGTATCGGTGCCTCCTATCCATCCCCTGCATCATTCTGCATCCACAATAGGGGGTTCCACCTCTGGCCTCCTTCTGACTCCACCACCAACTTTATTAACTCCTGATCAATTAGCACAGCCCATGTCATCCATGCTTTCTTCCTCACAGAAAGTATACCCTGATCAGAGGGATAAGGTTGCTCCAACATCAACATCTCCTAATACTTTGAGCACAATGTCTACTCCAGCACTTCAAGCACCATTGTTGCCATTGCCAGCCTCTGCTCAACAGTCTCAGAAGTCTGCTGTGCAGTTCACTGAAGAATTCGATTTTATAGCGATGAATGAAAGGTTTAAAAAGGATGAAGTTTGGGGTTATCTTGGAAAGGCAAAGCAAAGGGATGAAAAGGAAGGGATGGAGGACAATGCACTTGGTCAAGGCTTGGGTGACAGAGAGGGTTATGGACAAGTACCCAAATCGGATGCTAAACCTGCTTATAATAAGGATGAGTTCTTTGACACAATTTCTTGTAATTCTCATGCCCGCGGGACTAGGAATGGACAGAACAGGTTCTCTGCGCGAATGAAGATGGATACTGAGACTTTTGGCAATTTTCAGCAGAGACCTCATCTAGGTTATGGTGGCTACAGAGCTGGGCGTGGTGAGAACTACCGTGGCTCATATAACCGGGGAAGAGGATTTGCCTATGGTGGGAGAGGGGGTGGTTGGGACATGCCCATGTGA 1707 0.4575 MATEPSADSYVGSFITLISKCEIRYEGVLYFLNAQDSTIGLKNVRSYGTEGRKKDGTQIPPSDKVYEFILFRGSDIKDLQVKSTPPAQKEDQIHDDPAIIQSHCSGGLSSSLASASVGGGALTESSGYQDAPALVHRAYPGALPSYQSGMPVGPLGQPQTTQIAGVPSHAMSMYWQGYNETSISTSHAPQQPSPQATSTTSFPSALPNELQAPEIQASPSVSLTNTLECIAPAPSLIASDSAPSLIPSNSVPSLIPLNSALSKFSSSLTQEQFSTSSDTMSFLSAKATLPSYSAPVNSNIINMSSFPSSYQDVNTTEAPITGKIVSDLVSVPPIHPLHHSASTIGGSTSGLLLTPPPTLLTPDQLAQPMSSMLSSSQKVYPDQRDKVAPTSTSPNTLSTMSTPALQAPLLPLPASAQQSQKSAVQFTEEFDFIAMNERFKKDEVWGYLGKAKQRDEKEGMEDNALGQGLGDREGYGQVPKSDAKPAYNKDEFFDTISCNSHARGTRNGQNRFSARMKMDTETFGNFQQRPHLGYGGYRAGRGENYRGSYNRGRGFAYGGRGGGWDMPM* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1141 568 ProSiteProfiles FFD box profile. 485 500 IPR025761 -
Vvi2g1141 568 PANTHER SCD6 PROTEIN-RELATED 5 562 - -
Vvi2g1141 568 MobiDBLite consensus disorder prediction 370 400 - -
Vvi2g1141 568 Pfam FDF domain 424 525 IPR019050 -
Vvi2g1141 568 MobiDBLite consensus disorder prediction 182 206 - -
Vvi2g1141 568 ProSiteProfiles Sm domain profile. 2 85 IPR047575 GO:0003723
Vvi2g1141 568 MobiDBLite consensus disorder prediction 455 483 - -
Vvi2g1141 568 SMART FDF_2 424 527 IPR019050 -
Vvi2g1141 568 SMART LSM14_2 4 104 IPR025609 -
Vvi2g1141 568 CDD LSm14_N 7 81 IPR025609 -
Vvi2g1141 568 ProSiteProfiles TFG box profile. 507 527 IPR025768 -
Vvi2g1141 568 SUPERFAMILY Sm-like ribonucleoproteins 9 86 IPR010920 -
Vvi2g1141 568 ProSiteProfiles DFDF domain profile. 418 454 IPR025762 -
Vvi2g1141 568 Gene3D - 2 85 - -
Vvi2g1141 568 Pfam Scd6-like Sm domain 10 83 IPR025609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1141 Vvi-Chr2 18148413 18167906 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1141 K18749 - vvi:100244212 1049.27