Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1136 ATGGCTGAAAGCCAGACAAACCCTAAACCAAAAGAAATCTCCCCGGACGCCAAAACCCTCCTCCAAATCATTTCCGCCACCGCCCCCCACGCCCTCGTCGCCGCCCTCTCCGCCACCTCCATCCCCCCAACCCCGGACGTCGTCCAAGACGTCCTCCGCCTTTCCTACTCCAACTCCTCAGCTGCCGTCGAGTTCTTCCGTTGGGCGGGCCTCACGCGTAAGCACTCCGCTCACTCATGGAACCTCATCGTCGACCTACTCGGCAAGAACTCCAAGTTCGAGCCCATGTGGGACGCAATTCGGTCCATGAGGAATGAGGGTGCGTTGTCGTTGTCCGCTTTTATTTCTGTTTTCGGAAGCTATTGCTCCGTCGGCAGGGTTAATGAGGCGATTATGAGCTTTGAGGTTATGGACAGGTATGGAATTCCACCGGATGTGGCAGCAATGAATGCTCTATTAAGTGCCATTTGCTGCGAGGGTGGCTCAACTACACTGGCGCTTGAATTCTTTGAGAAAATCAAAGTGAAGATTACACCAGATGGTGATACTTTCATGATCTTGTTGGAGGGGTGGGAGAGAGAAGGCAACGTGACAAAGGCGAAGAGTACTTTTGGGGAAATGGTGGTTCGACTTGGTTGGAGTCCGCAAAATATGGTGGCTTACAACTCGGTTTTGATGACACTTGTTCGAGGAATGGAGGTGGAGGAGGCAATCAAGTTTCTTCTAGTGATGAAAGGGAAGGGTTGCTTGCCAGGTTTGAAATTCTTCTCTAATGCTCTTGATGTTCTCCTTAAGCAGAATGATTCAACTCATGCAATTGCTTTGTGGGACATAATGTTGGATGGTGGTTTCATGCCAAATTTGATGATGTATAATACCATAATTGGTATACTCTGCAATGCTGGTGATGCTGATAACGCATTTCGGTTTTTGGATGAGATGGTTTTCTATGGTGTGTTTGCTGATTCTTTCACGTATAACATGATTTTTCAATGTCTTGTTAAGCATAAGAAGGTTCATGAAGCGGGAAAGTTCTTCATCGAAATGATCAAGAATGAATGTCCTCCAATGCCTTCTAATTGTGCTGCTGCTATTGCAATGTGTTTTGATGGTGATGACCCGGAGATGGCAATTGAGATTTGGAGCTATATGATTGAGAACTCACTCTCTCCTGTTGACGAGAGTGCAAATGCATTGCTTATTGGGCTTTGTAATTTGCGTAGGTTTTCTGATTACAGGAGGTTTGCAGAAGATATGCTTGATATGAAGATTAAAATTCATGAGTCAACCATGGAAAAACTGAAGAATGCACGCTACAAAGATGGTAGAAGTGCAAGAGATACATGTGATAGTTTATGGAAAAGGTGGAAAGTATCTCAAGATTCTGTTTTATGA 1395 0.4566 MAESQTNPKPKEISPDAKTLLQIISATAPHALVAALSATSIPPTPDVVQDVLRLSYSNSSAAVEFFRWAGLTRKHSAHSWNLIVDLLGKNSKFEPMWDAIRSMRNEGALSLSAFISVFGSYCSVGRVNEAIMSFEVMDRYGIPPDVAAMNALLSAICCEGGSTTLALEFFEKIKVKITPDGDTFMILLEGWEREGNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTLVRGMEVEEAIKFLLVMKGKGCLPGLKFFSNALDVLLKQNDSTHAIALWDIMLDGGFMPNLMMYNTIIGILCNAGDADNAFRFLDEMVFYGVFADSFTYNMIFQCLVKHKKVHEAGKFFIEMIKNECPPMPSNCAAAIAMCFDGDDPEMAIEIWSYMIENSLSPVDESANALLIGLCNLRRFSDYRRFAEDMLDMKIKIHESTMEKLKNARYKDGRSARDTCDSLWKRWKVSQDSVL* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1136 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Vvi2g1136 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Vvi2g1136 464 Gene3D Tetratricopeptide repeat domain 162 245 IPR011990 GO:0005515
Vvi2g1136 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Vvi2g1136 464 Pfam PPR repeat family 286 335 IPR002885 -
Vvi2g1136 464 NCBIfam pentatricopeptide repeat 219 251 IPR002885 -
Vvi2g1136 464 NCBIfam pentatricopeptide repeat 290 322 IPR002885 -
Vvi2g1136 464 NCBIfam pentatricopeptide repeat 324 356 IPR002885 -
Vvi2g1136 464 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 58 430 - -
Vvi2g1136 464 Pfam Pentatricopeptide repeat domain 136 188 IPR002885 -
Vvi2g1136 464 Gene3D Tetratricopeptide repeat domain 254 463 IPR011990 GO:0005515
Vvi2g1136 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Vvi2g1136 464 Gene3D Tetratricopeptide repeat domain 51 160 IPR011990 GO:0005515
Vvi2g1136 464 Pfam PPR repeat 219 249 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1136 Vvi-Chr2 18028405 18030212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1136 79 454 Glycosyltransferase AT1G05670 21.205 6.01e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1136 - - vvi:109121403 936.406