Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1133 ATGAATGCGTTCAAGGCTTTTAAAGCATGTGTTCCGGTTGCATGGAGCCCTAATCTTTATATAACCTTGGTGAGGGGCATTCCAGGAACTAGGAGACTCCACAGGCGTACATTAGAGGCACTGCGCCTCCGAAAGTGCAACCGAACTGTCATGAGATGGAACACTCCTACTGTCAGGGGAATGCTTCAACAGGTAAAAAGATTAGTTGTTATTGAGACAGAAGAGATGTATAAGGCTCGCAAACTGAAGGAGACCAACCATCGAGCTCTACGCCCACCTTTGGTCATAAACCATGTCCTTCCCCCACCAGCAAATGATTCTTCTTAG 327 0.4679 MNAFKAFKACVPVAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKLKETNHRALRPPLVINHVLPPPANDSS* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1133 108 FunFam 50S ribosomal protein L30 17 98 - -
Vvi2g1133 108 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L30 1 106 IPR005996 GO:0003735|GO:0006412|GO:0015934
Vvi2g1133 108 Pfam Ribosomal protein L30p/L7e 20 69 IPR016082 -
Vvi2g1133 108 Hamap 50S ribosomal protein L30 [rpmD]. 16 73 IPR005996 GO:0003735|GO:0006412|GO:0015934
Vvi2g1133 108 SUPERFAMILY Ribosomal protein L30p/L7e 18 72 IPR036919 -
Vvi2g1133 108 Gene3D - 17 78 IPR036919 -
Vvi2g1133 108 NCBIfam 50S ribosomal protein L30 19 72 IPR005996 GO:0003735|GO:0006412|GO:0015934
Vvi2g1133 108 CDD Ribosomal_L30 19 72 IPR005996 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1133 Vvi-Chr2 17983716 17984127 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1133 K02907 - vvi:100261459 223.016