Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1124 ATGATGGTGATGAGGAGAAGACTGGCATGTTGCACAAGGGAAAGAGAGCTCAGCCTCGACTTGGATGAGCAAGAGAGGATCATGACCTATAATGGACTGGAGAATTGCATCCTCAATGGCCACTCTTATGAAAATGAAAGTCATACTAGCAGAGGAGATGGATGTGCAACCGACTCCTTGGATGAAGATGACACGAGCTGTTCTTCAAGCAAAGATGCTTTTGGATCTTTCTCGTCTAAATGGTTGACGATGAACATGAAGAAGGATGAACATGGACTGGATGAGTGGGAGGTCCCTGAGAGTCCCCAACACTTTTATGTCAAAGAGAAACCGGGTTATTCCGTTCGGTTTTCAGATGTTGAGGTCATGAAAGAAAGATTTTCAAAGCTGTTATTGGGTGAAGATATTACTGGAGGAAAAAAGGGTCTAACCTCTGCATTAGCATTGTCCAATGCAATAACGAACCTTGCAGTGTCAGTTTTTGGGGAGCTGTGGAAATTGGAGCCGCTATCTGAAGAAAGAAAGGTCAAATGGCAACGAGAAATGGACTGGTTGCTCTCCCCCACCAACTACATGGTTGAGTTGGTACCTGCAAAGCAAAGCGGCGCCAATGGCCGAACCTTGGAGATAATGACCCCAAAAGCCCGGGCTGACATCCACATGAATCTCCCTGCACTTCAGAAGCTTGACTCTATGCTTATTGAGACGCTGGACTCGATGGTGGACACAGAGTTTTGGTATGCAGAAGGAGGGAGCCGGGCAGAAGGAAGGACCAGAAGCATGAGCCAGAGCAAAAGGTGGTGGCTCCCATCACCCCAAGTACCAACAACCGGGCTCTCAGACCCTGAAAGAAAGAAGCTGCTTCATCAGGCTAAGGTGGTACATCAAGTGTTCAAGGCTGCCAGAGCAATCAACGAAAATGTGCTGCTGGAAATGCCTGTGCCAACCCTCATCAGGGATGCTCTCGCCAAGTCTGGAAAGGCAAACCTTGGTGAGGAACTATACCGGGTACTGACTGCAGAATCAAGCTCTGCTGAGGAGATGCTGAGTTCCCTCAATCTGAAATCTGAGCACAGTGCTCTCGAGGCCATTAACAGGCTGGAAGCTGCAGTATTCGCATGGAAGGAGAGAATCACAGAGCAAGTCAGCGGTAAATCTCCTGTTCGAACATCATGGTCTTTCATAAAAGACCCCACGACCGAGCTGGACAAAATGGAGTTGATTCTGTTCCGTGCTGAAGCTCTCTTGCAACAGCTCAGGACCCGGTATCCAAATCTCCCTCAGTCCTTCCTTGATGTGGCGAAAATCCAATATGGCAAGGACATAGGACACTCCATCCTGGAAGCCTATTCTCGGGTTCTTGGCAACTTGGCATCCAGCATACTCTGCCGAATGCGTGATATTCTGCAGGAAGACGTCTTCAGCAATCCAAACTCACCCATTGCAACAACAAGCTGCTTTCCGGGAATCAATCTCACTGGAATGACTGAAACTCCAACGCCTAGTCTGCGCATAAGACACTCACTGATTGATCAGATGAACATGGTGGATGGGCGGTTTCGTGACCCGAATGCAGGTGCTTCTCCTGACTGTGAAGCGTCATACAGCGACTCCAGAAGAAGCTCAGTCATGGCAACGCCTAGCCGGAGCCGGAAGTATAAGAAGAAGACGACGACCCATCTCAAAAGTCGCTTCGAACAGGGGCTGAATTATATCATGGGTTTGCCAAGATTTTCACGTCCTAAGGGAGTGGATGGCGAGTTGAGTCCTAATCTCTATGTGGCAAACTGTGGGCCAGCTGTTGGACTTTCTTTTGACACTATCGCTTCAGTGTTCAGTACCTTTGGAGAAGTGAAAGGGGTCTATCCAGCAGATGACAGTGGTGCTCGCGTTATTGTTTCTTATTTTGAAGAGAGTGCTGCTCAAGCAGCCTTAAAAGCATTAGATGGACATCCCTGTCCTGCTCTTGGAGGTCGTTTTTTGCACATTCGTTATTCAATATTTCAACCACCTAGCCAGGTCAATGATTCTGTACCAGTATCTTTGGTGGATTCAGAGTTGAACATTCCAGGCATCTACTTGTTGCATGATTTTGTCAGTGCTAAAGAAGAGGAGGAACTGCTTGCAGCGGTTGATAAGATGTCTTGGAAAAGTCTCTCAAAAAGAAGGGTCCAACATTATGGATATGAGTTTTGCTATGAAACAAGGAACGTTAATACAAAACAGTATTTGGGCAAACTTCCATCATTTGTTTCTGCTATAGTTGAAAGAATCTCATCATTTCCCAACCTTGAATCTGCCGCTGATATAGTTTTGGACCAACTAACGGTTAACGAGTATCCACCTGGTGTGGGCTTGTCCCCACATATAGATACCCATTCAGCATTTGAGGGATTCATTTTCAGCCTCTCATTGGCAGGGCCCTGCATTATGGACTTCAGAAGATATACAGAAGGTGTTTGGCCTAAATCTGCCTCAAGCTCTGACATGAGTGTGGAATATCCTGACAAAAGCTCAAGTTTTTTAAGAAGGGCTATTTATCTTCCCCCCCGTTCAATGCTTCTGTTATCTGGAGAGGCACGGTATGCTTGGCATCACTATATTCCCCACCATAAGATCGACATGGTGAAGGACAGTGTGATCAGAAGAGGTCCGAGGAGGGTATCCTTCACATTTCGTAAGGTGAGAACAGGTCCTTGCCAATGTGAATTTCCTCAGTATTGTGACTCCCCCAGATAA 2739 0.4688 MMVMRRRLACCTRERELSLDLDEQERIMTYNGLENCILNGHSYENESHTSRGDGCATDSLDEDDTSCSSSKDAFGSFSSKWLTMNMKKDEHGLDEWEVPESPQHFYVKEKPGYSVRFSDVEVMKERFSKLLLGEDITGGKKGLTSALALSNAITNLAVSVFGELWKLEPLSEERKVKWQREMDWLLSPTNYMVELVPAKQSGANGRTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVDTEFWYAEGGSRAEGRTRSMSQSKRWWLPSPQVPTTGLSDPERKKLLHQAKVVHQVFKAARAINENVLLEMPVPTLIRDALAKSGKANLGEELYRVLTAESSSAEEMLSSLNLKSEHSALEAINRLEAAVFAWKERITEQVSGKSPVRTSWSFIKDPTTELDKMELILFRAEALLQQLRTRYPNLPQSFLDVAKIQYGKDIGHSILEAYSRVLGNLASSILCRMRDILQEDVFSNPNSPIATTSCFPGINLTGMTETPTPSLRIRHSLIDQMNMVDGRFRDPNAGASPDCEASYSDSRRSSVMATPSRSRKYKKKTTTHLKSRFEQGLNYIMGLPRFSRPKGVDGELSPNLYVANCGPAVGLSFDTIASVFSTFGEVKGVYPADDSGARVIVSYFEESAAQAALKALDGHPCPALGGRFLHIRYSIFQPPSQVNDSVPVSLVDSELNIPGIYLLHDFVSAKEEEELLAAVDKMSWKSLSKRRVQHYGYEFCYETRNVNTKQYLGKLPSFVSAIVERISSFPNLESAADIVLDQLTVNEYPPGVGLSPHIDTHSAFEGFIFSLSLAGPCIMDFRRYTEGVWPKSASSSDMSVEYPDKSSSFLRRAIYLPPRSMLLLSGEARYAWHHYIPHHKIDMVKDSVIRRGPRRVSFTFRKVRTGPCQCEFPQYCDSPR* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1124 912 MobiDBLite consensus disorder prediction 45 71 - -
Vvi2g1124 912 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 118 475 IPR005512 GO:0005085
Vvi2g1124 912 Gene3D PRONE domain, subdomain 1 354 481 - -
Vvi2g1124 912 Gene3D PRONE domain, subdomain 1 113 351 - -
Vvi2g1124 912 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 19 552 IPR038937 GO:0005085
Vvi2g1124 912 Gene3D - 582 677 IPR012677 -
Vvi2g1124 912 FunFam ALKylated DNA repair protein AlkB homolog 685 899 - -
Vvi2g1124 912 Gene3D - 687 899 IPR037151 -
Vvi2g1124 912 ProSiteProfiles PRONE domain profile. 110 482 IPR005512 GO:0005085
Vvi2g1124 912 Coils Coil 402 422 - -
Vvi2g1124 912 MobiDBLite consensus disorder prediction 521 558 - -
Vvi2g1124 912 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 771 896 IPR005123 -
Vvi2g1124 912 SUPERFAMILY Clavaminate synthase-like 689 896 - -
Vvi2g1124 912 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 590 668 IPR000504 GO:0003723
Vvi2g1124 912 MobiDBLite consensus disorder prediction 534 548 - -
Vvi2g1124 912 Pfam 2OG-Fe(II) oxygenase superfamily 692 893 IPR027450 -
Vvi2g1124 912 FunFam Rop guanine nucleotide exchange factor 14 113 343 - -
Vvi2g1124 912 FunFam Rop guanine nucleotide exchange factor 14 345 481 - -
Vvi2g1124 912 SUPERFAMILY RNA-binding domain, RBD 590 672 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1124 Vvi-Chr2 17792452 17807280 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1124 - - cic:CICLE_v10004016mg 1242.25