Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1115 ATGGGACTGCCTCTGGCTCTCACTCAAACCCTTGTTGCACAACAAACTTCATTTGAAGACCGTTTCCCACTCTCATTCTTCAGCCTCCGTGGCCCTTTAACCTCCTCTCAACAGCCATGGCAGCCTCGCCGCCGCCTCCAGGTTCACCTCTCAATGCCCTCTAAACCCTTAAAAGACCCCATTTCGTGTTTACATCAATCAATGGATTTGAGAATAACCCTCCTCCCAAAACCCACACCAATCTTCTGCCCAATCGCACGCCCCCTTACCTGTGTCACCTCCGCCGCCCCACATCCACCGTCGCCATTGCCGTCCCAGAATCAGCCTCCTTCTTCGGATCATGCTCTTCTCAAATCGGTAACTTCAATTCTCTCAAACCCATCTCTGGATTCCACTCAGTGTAAACAACTCATACCCCATTTGTCTCCTCATCAATTCGATTCTGTATTCTTCTCCGTAAGACGTAATGTTAACCCCAAAACTGCTTTGAATTTCTTTTATTTTGCTTCTGATTCATGTGGGTTTCGATTCACTCTTCGATCATACTGTGTTTTGATGCGTAGTTTGATTGTTTCGGGCTTTGTCTCTCCCGCTAGGCTGCTTTTGATCCGTTTAATCGATCGGAAGCTGCCCGTTTTGTTCGGGGACCCGAAAAATAGGCACATTGAGATAGCCAGTGCAATGGCGGATTTGAATGAGGTGGGCGAGTCGGGTGTTGCGGTTGCGGCAGTTGATTTGTTGATTCATGTCTATTGTACCCAATTCAGGAATGTGGGTTTCCGGAATGCTATTGGCGTTTTCCGGTTTTTGGCTAATAAGGGTGTGTTTCCAACTGTGAAGACTTGTACCTTTTTGCTGAGTTCTTTAGTTAAGGCGAATGAACTTGAAAAGAGTTATTGGGTGTTTGAGACTATGCGCCAAGGTGTTTCTCCAGATGTTTACTTGTTTAGCACTGCAATTAATGCCTTTTGTAAGGGAGGGAAGGTTGAGGATGCTATTCAGTTGTTTTTTGACATGGAGAAGTTGGGTGTTTCTCCGAATGTTGTTACATATAATAATCTTATTCATGGTTTATGCAAGCATGGGAATTTAGATGAGGCTTTTCGATTCAAGGAGAAAATGGTGAAAGATGGCGTGAATGCTACTCTTATAACTTACAGTGTTCTTATTAATGGTTTGATGAAATTGGAAAAGTTTAATGAAGCAAATTCTGTTTTGAAGGAAACGTTGGAAAAGGGGTTTACACCGAATGAGGTTGTTTATAACACATTGATTGATGGATACTGTAAAATGGGAAACCTTGGGGATGCATTGAGGATAAGGGGTGATATGGTCTCCAAGGGAATCAACCCCAATTCAGTTACTCTTAATTCAATCATCCAGGGATTTTGCAAGATTGGGCAGATGGAACAAGCTGAGTGCATTTTGGAGGAGATGCTATCGAGAGGATTCTCTATAAACCCTGGTGCTTTTACTACGATTATTCACTGGTTATGTATGAATTCTAGGTTTGAGTCTGCACTAAGATTCCTCAGGGAGATGCTATTAAGAAATATGAGACCCAATGATGGGTTGCTGACCACATTGGTGGGTGGGCTTTGTAAGGAGGGTAAGCACTCAGATGCAGTGGAACTTTGGTTTAGGCTCTTGGAGAAAGGCTTTGGAGCCAATTTAGTGACCACAAATGCTCTAATTCATGGACTTTGCAAAACGGGTAATATGCAAGAGGCTGTTAGGCTTCTCAAGAAGATGTTAGAAAGGGGTTTCGTATTGGATAAGATCACATACAACACACTCATCTCAGGGTGTTGCAAGGAGGGAAAGGTTGAGGAAGGTTTTAAATTGAGGGGAGAAATGGTTAAGCAAGGAATTGAACCAGACACTTTTACTTACAATTTGCTGATACACGGGATGTGTCGTATTGGTAAATTGGACGAAGCTGTGAACCTTTGGAATGAATGTAAAAGTAGAGATCTAGTTCCAAATGTTTATACATATGGTGTCATGATTGATGGATATTGTAAGGCTGACAAAATTGAGGAGGGAGAAAAACTCTTCACTGAGTTGCTCACTCAGAATTTGGAACTGAATTCTGTTGTTTATAATACACTTATCAGAGCATACTGTCGAAATGGGAATACAGTGGAGGCCTTTAAACTTCATGATGACATGAGAAGCAAGGGTATTCCACCAACTACAGCCACATATTCTTCTCTAATACATGGAATGTGCAATATTGGACGCATGGAGGATGCAAAATGCCTTATTGATGAAATGAGAAAGGAGGGTTTGCTTCCAAATGTTGTCTGTTATACTGCACTAATTGGTGGTTACTGTAAGCTAGGTCAGATGGATAAAGTGGTGAATGTCTTGCAGGAAATGTCTTCATATGACATACACCCTAATAAAATTACGTATACTGTCATGATTGATGGATATTCCAAATCAGGTGATATGAAAACAGCAGCTAAGCTTCTACATGAAATGGTAGGAAAAGGAATTGTCCCAGACACTGTCACTTATAATGTCTTGACAAATGGGTTTTGCAAGGAAGGGAAGATAGAAGAAGGTTTTAAAATATGTGATTATATGTCCCAGGAAGGGTTACCTTTAGATGAAATTACATATACTACTTTGGTTCATGGGTGGCAACAACCATCAGCATTAACAAATCAAGAGTGA 2682 0.4169 MGLPLALTQTLVAQQTSFEDRFPLSFFSLRGPLTSSQQPWQPRRRLQVHLSMPSKPLKDPISCLHQSMDLRITLLPKPTPIFCPIARPLTCVTSAAPHPPSPLPSQNQPPSSDHALLKSVTSILSNPSLDSTQCKQLIPHLSPHQFDSVFFSVRRNVNPKTALNFFYFASDSCGFRFTLRSYCVLMRSLIVSGFVSPARLLLIRLIDRKLPVLFGDPKNRHIEIASAMADLNEVGESGVAVAAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGWQQPSALTNQE* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 732 766 IPR002885 -
Vvi2g1115 893 SUPERFAMILY TPR-like 279 446 IPR011990 GO:0005515
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 697 731 IPR002885 -
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 767 801 IPR002885 -
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Vvi2g1115 893 SUPERFAMILY HCP-like 534 728 - -
Vvi2g1115 893 Pfam PPR repeat 527 554 IPR002885 -
Vvi2g1115 893 Pfam PPR repeat 559 589 IPR002885 -
Vvi2g1115 893 Pfam PPR repeat 490 518 IPR002885 -
Vvi2g1115 893 Pfam PPR repeat 281 307 IPR002885 -
Vvi2g1115 893 PANTHER ATPASE EXPRESSION PROTEIN 3 97 619 - -
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 627 661 IPR002885 -
Vvi2g1115 893 Gene3D Tetratricopeptide repeat domain 487 611 IPR011990 GO:0005515
Vvi2g1115 893 Gene3D Tetratricopeptide repeat domain 612 712 IPR011990 GO:0005515
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 802 836 IPR002885 -
Vvi2g1115 893 Pfam PPR repeat family 697 745 IPR002885 -
Vvi2g1115 893 Pfam PPR repeat family 346 395 IPR002885 -
Vvi2g1115 893 Pfam PPR repeat family 766 815 IPR002885 -
Vvi2g1115 893 Pfam PPR repeat family 416 465 IPR002885 -
Vvi2g1115 893 Pfam PPR repeat family 593 640 IPR002885 -
Vvi2g1115 893 Pfam PPR repeat family 836 882 IPR002885 -
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 592 626 IPR002885 -
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 557 591 IPR002885 -
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 662 696 IPR002885 -
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 837 871 IPR002885 -
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Vvi2g1115 893 Gene3D Tetratricopeptide repeat domain 149 310 IPR011990 GO:0005515
Vvi2g1115 893 Gene3D Tetratricopeptide repeat domain 713 798 IPR011990 GO:0005515
Vvi2g1115 893 Gene3D Tetratricopeptide repeat domain 311 410 IPR011990 GO:0005515
Vvi2g1115 893 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 315 348 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 594 628 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 527 556 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 769 802 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 349 380 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 664 697 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 384 418 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 491 522 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 629 663 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 454 487 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 699 732 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 804 838 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 735 768 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 839 872 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 559 592 IPR002885 -
Vvi2g1115 893 NCBIfam pentatricopeptide repeat 419 452 IPR002885 -
Vvi2g1115 893 Pfam PPR repeat 308 340 IPR002885 -
Vvi2g1115 893 Pfam PPR repeat 658 688 IPR002885 -
Vvi2g1115 893 Gene3D Tetratricopeptide repeat domain 799 892 IPR011990 GO:0005515
Vvi2g1115 893 Gene3D Tetratricopeptide repeat domain 411 483 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1115 448 883 Glycosyltransferase AT1G05670 30.892 1.32e-75 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1115 - - vvi:100240858 1669.44