Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1112 ATGGCTCCCAACACCAAGCCCAAAAAGGGCTTTCTTCCACCCCAAACAAGCCTCACAACAACCCTTTTCTTCATTGTTCTCTTCACCATTCCAGCTCTTCTTCTCCTCCATGCCCCTTCCACCTCCATCTCCAACACCTTCTCCTCCCATGCCAGTCCCTGGACCGGTGACCTCCGTGTAGCTGAGTTCGCCTGGAACCGCCTGGAGCTGGGCGGGAGCCGTGCCCCACCCGTCGTCCTCAAGATCGCGGTCTTCTCAAGGAAATGGCCTATTGGCACAGCCCCAGGTGGCATGGAGCGCCATGCCCACACGCTGCACACAGCCCTATCCCGCCGCGGCCACCGCGTCCACATCTTCACCTCCCCGCCTGGAGACCAGAGAGGAGCAGCTGCTTTGCAAGAAATGAATATGCAGCCTAACGGCACCCCAACGTCCTCATCCCCGAGAATTCACTGCCATGAAGGGGAACCAGGGCGGTGGCGCTACAACAAGGCGTGGGAGCAGTTTGTTGAGGAGAACCGCCAGGACCCTTTCGACGTAGTCCACTCAGAAAGCGTCGCGCTGCCTCACTGGCTGGCGAAAACTCTCCCCAACCTTGCGGTCTCATGGCACGGTATTGCCCTTGAGAGCTTGAGCTCAGACCTCTACCAAGACTTGGCCCTGCGCCCCCCCGGTGAGCCCATCTCTCCAGGCTTCAACAGGAGTGTCCAAGGGGTGATCCCAAAAGTCCTGAATGAAATAAGGTTCTTCCACAACTATGCCCACCACGTAGCCATAAGCGATAGCTGTGGAGAAATGCTAAGGGATGTATACCAAATCCCCACCAAAAGAGTCCATGTGATTCTGAATGGAGTCGATGAGGAAGACTTCCGGCAGGACCTGGAGCTAGGTCACCAGTTCCGGTCCAGAATCGGGATCCCACAAAACGCTAGTTTAGTACTAGGAGTTGCAGGGAGGCTAGTGAAGGACAAAGGGCATCCCATACTCCATGAGGCCTTCTCCAGGTTCATAAAACGACACCCAGATGCCTACTTGATTGCTGCAGGCTCAGGGCCATGGGAGAACAGGTACAAGGACTTGGGGCGCCAGGTACTAGTCTTGGGATCCATGAATCCTTCCCAGCTTCGGGCCTTCTACAACTCGATCGATGTCTTTGTGAACCCAACTCTTAGGCCTCAGGGGCTCGATCTCACTCTAATGGAGGCCATGATGAGTGGGAAGGCTGTATTGGCATCAAGGTTTCCAAGCATAAAAGGCACAATTGTGGTTGATGATGAGTATGGGTTCATGTTTTCTCCAAATGTGGAGTCACTGTTGGAAGCAATGGAACAAGTGGTGAAAGAGGGAAGAAGAAGGTTAGCACAAAGGGGAAAGGCGTGTAGGATATATGCAACCTCTATGTTTACTGCAACCAAGATGGCCTTAGCATATGAGAGGATGTTTCTTTGTATAAAAAATGAAACATTTTGTATGTACCCTTAG 1482 0.5331 MAPNTKPKKGFLPPQTSLTTTLFFIVLFTIPALLLLHAPSTSISNTFSSHASPWTGDLRVAEFAWNRLELGGSRAPPVVLKIAVFSRKWPIGTAPGGMERHAHTLHTALSRRGHRVHIFTSPPGDQRGAAALQEMNMQPNGTPTSSSPRIHCHEGEPGRWRYNKAWEQFVEENRQDPFDVVHSESVALPHWLAKTLPNLAVSWHGIALESLSSDLYQDLALRPPGEPISPGFNRSVQGVIPKVLNEIRFFHNYAHHVAISDSCGEMLRDVYQIPTKRVHVILNGVDEEDFRQDLELGHQFRSRIGIPQNASLVLGVAGRLVKDKGHPILHEAFSRFIKRHPDAYLIAAGSGPWENRYKDLGRQVLVLGSMNPSQLRAFYNSIDVFVNPTLRPQGLDLTLMEAMMSGKAVLASRFPSIKGTIVVDDEYGFMFSPNVESLLEAMEQVVKEGRRRLAQRGKACRIYATSMFTATKMALAYERMFLCIKNETFCMYP* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1112 493 CDD GT4_PimA-like 81 481 - -
Vvi2g1112 493 Gene3D Glycogen Phosphorylase B; 79 300 - -
Vvi2g1112 493 Pfam Glycosyl transferases group 1 313 458 IPR001296 GO:0016757
Vvi2g1112 493 Gene3D Glycogen Phosphorylase B; 301 461 - -
Vvi2g1112 493 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 81 480 - -
Vvi2g1112 493 Pfam Glycosyltransferase Family 4 96 288 IPR028098 -
Vvi2g1112 493 PANTHER GLYCOSYLTRANSFERASE 19 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1112 Vvi-Chr2 17600963 17602444 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1112 1 493 Glycosyltransferase AT4G19460 63.095 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1112 - - vvi:100252842 998.038