Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1108 ATGGCTTCCAGTACCAAGCCCAAAAGGGGCTTTCTCCCACCCCAAACAAGCCTCACAAGAACCCTTTTCTTCATTGCTCTCTTCACCATTCCAGCTCTTCTTCTCCTCCATGCCCCTTCCACCTCCATCTCCAACACCTTCTCCTCCCATGTCAGTCCCTGGACCGGTGACCTCCGTGGAGCTGAATTCGCCTGGAACCGCCTGGAGATGGACGGGAGCCGTGCCCCACCCGTCGTCCTCAAGATCGCGGTCTTCTCAAGGAAATGGCCTATTGGCACAACCCCAGGTGGCATGGAGCGCCACGCCAACAGGCTGCACACAGCCCTATCCTGCCGCGGCCACCGCGTCCACGTCTTCACCTCCCCGCCTGGAGACCAGAGAGGACCAGCTGCTTTGCAAGCAATGAATATGCAGTCTAACGGCAGCCCAACGTCCTCGTCCCCGAGAATTCACTTCCATGAAGGGGAACCAGGGCGGTGGGTCTACAACAAGGCGTGGGAGCAGTTTCTGGAGGAGAACAGCCTGGACCCCTTCGACGTAGTCCACTCAGAAAGCGTCGCGCTGCCTCACTCGCTGGCGAAAACTCTCCCCAACCTTGCGGTCTCATGGCACGGTATTGCCCTTGAGAACTTGATGTCAGACATCTACCAAGAATTGGCCCTGCGTCGCCCCGGTGAGCCCATCTCTCCAGGCTTCAACGGCCAACGGGCGGTCCTAAAAGTTCTGAATGAAATAAGGTTCTTCCACGACTATGCCCACCATGTAGCCACAAGCGATAGCTCTGGGGAAATAATAAGGGATGTATACCAAATCCCCACCCAAAGAGTCCATGTGATTCTGAATGGAGTCGATGAGGAAGATTACCAGCAGGACTGGCAGCTAGGTCACCAGTTCCGGTCCAGAATCGGGATCCCACAAAACGCTAGTTTAGTACTAGGAGTTGCAGGGAGGCTAGTGAAGGACAAAGGGCATCCCATACTCCATGCTGCCTTCTCTAGGTTCATGAAACGGCACCCAGATGCCTACTTGATTGTTGCAGGCTCAGGGCCATGGGAGAACAGGTACAAGGACTTGGGGCGCCAGGTATTAGTCTTGGGGTCCATGAATGCTTCCCAACTTCGCGCCTTCTACAACTCGATCGACATCTTTGCGAACCCAACTCTTAGGCCTCAGGGGGTCGATCAGACTCAAGTGGAGGCCATGTTGAGTGGGAAAGCTATACTGGCATCAAGGTTGCCAAGCATCAAACGCAATGTTGTGGTTGATGATGAGTATGGGTTCATGTTTTCTCCAAATGCGGAGTCACTGTTGGAAGCAATGGAACAAGTTGCGAAAGAAGGGAGAAGTAGGTTAGCACAAAGGGGAAAGGCATGTAGGAGATATGCAGTCTCTATGTTTTCTGCAACCAAGATGGCCTTAGCATATGAGAGGTTATTTCTTTGTATCAAAAATGAAATATTTTGTATGTACCCTTAG 1476 0.5298 MASSTKPKRGFLPPQTSLTRTLFFIALFTIPALLLLHAPSTSISNTFSSHVSPWTGDLRGAEFAWNRLEMDGSRAPPVVLKIAVFSRKWPIGTTPGGMERHANRLHTALSCRGHRVHVFTSPPGDQRGPAALQAMNMQSNGSPTSSSPRIHFHEGEPGRWVYNKAWEQFLEENSLDPFDVVHSESVALPHSLAKTLPNLAVSWHGIALENLMSDIYQELALRRPGEPISPGFNGQRAVLKVLNEIRFFHDYAHHVATSDSSGEIIRDVYQIPTQRVHVILNGVDEEDYQQDWQLGHQFRSRIGIPQNASLVLGVAGRLVKDKGHPILHAAFSRFMKRHPDAYLIVAGSGPWENRYKDLGRQVLVLGSMNASQLRAFYNSIDIFANPTLRPQGVDQTQVEAMLSGKAILASRLPSIKRNVVVDDEYGFMFSPNAESLLEAMEQVAKEGRSRLAQRGKACRRYAVSMFSATKMALAYERLFLCIKNEIFCMYP* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1108 491 PANTHER GLYCOSYLTRANSFERASE 19 491 - -
Vvi2g1108 491 Gene3D Glycogen Phosphorylase B; 80 291 - -
Vvi2g1108 491 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 81 479 - -
Vvi2g1108 491 CDD GT4_PimA-like 81 479 - -
Vvi2g1108 491 Pfam Glycosyl transferases group 1 311 456 IPR001296 GO:0016757
Vvi2g1108 491 Gene3D Glycogen Phosphorylase B; 292 462 - -
Vvi2g1108 491 Pfam Glycosyltransferase Family 4 96 286 IPR028098 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1108 Vvi-Chr2 17518996 17520471 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1108 1 491 Glycosyltransferase AT4G19460 57.874 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1108 - - vvi:100258003 995.342