Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1106 ATGGGGAGAAACTCAGTTCAGAGATTGGGTTCGGTGTGGGTGCAGATCATGCATATATCAAGTGGAGGAAGAAGACCCAAGAAGAAAATCTACCACAGAGTCCATGAACTTGATAGAGTGATGGACTTGAAGAAGAAGCCATGCTTGATTCTGCAGCTCAAGTCCATCATCCAGAGCCAAAAGCACCAGTCTCTGCTTCTGAGGGACCTCGAAAAACAAGTGGGTTTTGTTCATAAATGGAATTTCATGGCTGTCATTGAGAAGTATCCTTCAATATTCCGTGTCAATGGAGGTAATAGAACGCCCCCTTCTGTTGAGCTCACTGAAAAGGCCAAAAGGATTGCTGATGAAGAAACTGAAGCTAGAAAGCAAATGGAGCCCATTTTGGTTGAGAATCTTAGGAAGCTTTTGATGATGTCTGTTGATTGCCGTGTGCCGCTTGAAAATATTGAATTTATCGAATCTGAACTGGGTTTGCCTCAAGATTTCAAGGAGACGTTGATTCCAAAGTACCCGGAATTTTTTTCAGTGAAGGATTTCAATGGGAGGGCCTATCTTCAATTGGAAAATTGGGATTCTTCGCTGGCAGTCACTGCCCGCGAGAAAAGGTTTGCACGTGAAAGAGTTCTAGACTCTGTTGGGCATGCCAGAAAGGCTAGAGTCTCGAAGGATGGTAACTTCTCTGGTCCGTATGCCTTTCTCATGAGTTATCCTGCCGGGTTTAGACCAAACATGAGTTATCTGGAAGAAGTCCAAAGGTGGCAGAAAATGGAGTTCCCTTCTCCATACTTGAATGCGAGGAGATTTGAAGCTGCAGATCCAAAAGCTCGGAAACGAGTTGTGGCAGTGCTTCATGAGCTCCTCAGTTTGACTATGGAGAAGAGGATGACATCTGCACAATTGGATGCATTTCATTCTGAGTTTCTGTTGCCCGCTAGATTGCTGCTTTGTTTGATTAAGCATCATGGTATCTTTTATATCACAAACAAAGGTGCAAGGAGTACCGTATTTCTTAAAGAAGCTTATGATGGATCAAATTTGATAGAAAAATCTCCTCTGCTCGGATTTAATAATAAATTTGTAGCACTTAGTGGTAGGAGAGAGAGCACATTGTGCAATGGAATTTCTTCATCTCATATTGTTACATAA 1149 0.4256 MGRNSVQRLGSVWVQIMHISSGGRRPKKKIYHRVHELDRVMDLKKKPCLILQLKSIIQSQKHQSLLLRDLEKQVGFVHKWNFMAVIEKYPSIFRVNGGNRTPPSVELTEKAKRIADEETEARKQMEPILVENLRKLLMMSVDCRVPLENIEFIESELGLPQDFKETLIPKYPEFFSVKDFNGRAYLQLENWDSSLAVTAREKRFARERVLDSVGHARKARVSKDGNFSGPYAFLMSYPAGFRPNMSYLEEVQRWQKMEFPSPYLNARRFEAADPKARKRVVAVLHELLSLTMEKRMTSAQLDAFHSEFLLPARLLLCLIKHHGIFYITNKGARSTVFLKEAYDGSNLIEKSPLLGFNNKFVALSGRRESTLCNGISSSHIVT* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1106 382 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 25 366 IPR045040 GO:0003723
Vvi2g1106 382 Pfam Plant organelle RNA recognition domain 32 367 IPR021099 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1106 Vvi-Chr2 17478430 17479578 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1106 - - vvi:100256382 761.911