Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1102 ATGGAGGGTTTCAGCCTGAAGTTTCTCTTCTACACCTTAGCAGTCATCTTCTTCATTCATTTCTCTGGACTTTCTCACACAGAAGCCAGCAATAAGGGCGGTTTCAGTACTGATCTCATCTCCCGTGATTCGCCTCTCTCCCCCTTCTACAATCCATCCGAAACCCAGTTTGATCGCCTGCAGAAAGCCTTCCATAGGTCCATTTCGCGTGCCAACCATTTTAGGGCTAATGGAGTGTCTACAAACAGCATCCAATCTCCTGTAATATCCAATAATGGAGAGTATCTCATGAACATATCACTTGGAACCCCACCAGTTTCAATGCATGGCATTGCTGACACAGGAAGTGATCTCTTATGGAGGCAGTGCAAGCCTTGTGATAGTTGTTACGAACAAATTGAACCTATTTTCGATCCCGCAAAGTCCAAAACTTACCAAATTTTATCGTGTGAGGGCAAATCCTGCAGCAACCTGGGAGGTCAAGGTGGTTGCAGTGACGACAACACCTGCATTTACAGTTACTCTTATGGAGATGGTTCACACACCTCTGGAGATCTCGCTGTTGACACCCTCACAATTGGATCCACTACAGGTAGACCGGTTTCGGTTCCAAAGGTTGTTTTTGGGTGTGGGCATAACAATGGTGGAACCTTTGAACTTCATGGTTCTGGCCTTGTAGGCCTTGGAGGTGGCCCTCTGTCAATGATTTCCCAATTGCGTCCGCTGATCGGCGGACGATTCTCCTACTGCTTGGTTCCGTTAGGAAATGATCCAAGTGTGTCAAGCAAAATGCATTTTGGTAGTCGGGGAATTGTCTCCGGTGCCGGAGCAGTTTCAACTCCTTTGGCTAGCAGACAACCTGATACATTCTACTATCTTACATTAGAAAGCATGAGTGTTGGAAGCAAGAAGCTGGCATACAAGGGTTTTTCCAAGGTGGGATCTCCTCTTGCAGATGCAGATGAGGGCAACATTATCATTGATTCTGGGACAACATTAACCCTTCTCCCCCAAGATTTCTATGGTACCTTGGAATCAAATGTAGTCAGCGCCATTGGCGGTAAGCCTGTTAGGGATCCGAATAATGTTTTTAGTCTTTGTTACAGTAATCTATCAGGCTTACGCATCCCTACTATCACTGCTCATTTCGTGGGAGCAGACCTTGAGTTGAAGCCATTGAACACATTTGTCCAAGTCCAGGAAGATTTGTTTTGCTTCGCCATGATACCGGTATCTGACTTGGCCATCTTTGGGAACTTGGCACAGATGAACTTCTTGGTAGGGTATGATCTCAAGAGCAGGACGGTCTCCTTCAAGCCTACTGATTGCACCAAGATTGATTGA 1344 0.4613 MEGFSLKFLFYTLAVIFFIHFSGLSHTEASNKGGFSTDLISRDSPLSPFYNPSETQFDRLQKAFHRSISRANHFRANGVSTNSIQSPVISNNGEYLMNISLGTPPVSMHGIADTGSDLLWRQCKPCDSCYEQIEPIFDPAKSKTYQILSCEGKSCSNLGGQGGCSDDNTCIYSYSYGDGSHTSGDLAVDTLTIGSTTGRPVSVPKVVFGCGHNNGGTFELHGSGLVGLGGGPLSMISQLRPLIGGRFSYCLVPLGNDPSVSSKMHFGSRGIVSGAGAVSTPLASRQPDTFYYLTLESMSVGSKKLAYKGFSKVGSPLADADEGNIIIDSGTTLTLLPQDFYGTLESNVVSAIGGKPVRDPNNVFSLCYSNLSGLRIPTITAHFVGADLELKPLNTFVQVQEDLFCFAMIPVSDLAIFGNLAQMNFLVGYDLKSRTVSFKPTDCTKID* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1102 447 PANTHER OS07G0603500 PROTEIN-RELATED 37 444 - -
Vvi2g1102 447 Gene3D Acid Proteases 274 445 IPR021109 -
Vvi2g1102 447 Gene3D Acid Proteases 74 267 IPR021109 -
Vvi2g1102 447 FunFam Aspartic proteinase CDR1 269 446 - -
Vvi2g1102 447 ProSiteProfiles Peptidase family A1 domain profile. 95 439 IPR033121 -
Vvi2g1102 447 Pfam Xylanase inhibitor N-terminal 95 268 IPR032861 -
Vvi2g1102 447 SUPERFAMILY Acid proteases 88 444 IPR021109 -
Vvi2g1102 447 CDD pepsin_A_like_plant 94 443 IPR034161 -
Vvi2g1102 447 Pfam Xylanase inhibitor C-terminal 291 439 IPR032799 -
Vvi2g1102 447 FunFam Probable aspartic protease At2g35615 74 267 - -
Vvi2g1102 447 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 325 336 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1102 Vvi-Chr2 17436530 17437873 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1102 93 446 Miscellaneous Gene Families AT1G77480 23.560 2.18e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1102 - - vvi:100257894 903.279