Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1090 ATGAATTCAACAATCTTCACATCCACAACCTCACTATGGCCTCCATCTTCTTTCTTCCCATGCAAAACCATGCAAGACTTGAAGCAACTCCATGCCCAGATGATCAAGACCGCCCAAATTCGAGACCCACTCGCCGCTGCCGAACTCCTCCGCTTCTCCGCCGTCTCCGACCACCGTGATCTCGACTACGCCCGCAAGATTTTCCGAAGCATGCACCGACCCAACTGCTTCTCCTACAACACCCTCATAAGAGCTCTGTCCGAGAGCAACGACCCATGTGATGCCTTGCTGGTGTTCATTGAAATGGTTGAAGATTGCAGTGTGGAGCCCAATTGCTTCACATTTCCTTCTGTTTTTAAGGCTTGTGGTAGAGCTGAGAGGCTCCGAGAAGGGAGGCAGGTTCATGGGTTGGCGGTGAAATTTGGACTTGATAGTGATGAATTTGTGGTTAGTAATGTTGTTAGGATGTATTTGAGTTGTGGGGTTATGGAGGATGCTCATAGGTTGTTCTACAGAAGGGTTTTTGTTGATGGGTGTGATGGAATTAGAGATAAGAAGAGGAGGGTTGATGGGGATGTTGTTTTGTGGAATGTCATGATTGATGGGTATGTGAGAATTGGGGAGCTTGAGGTTGCTAGGAATTTGTTTGATGAAATGCCTCAAAGAAGTGTAGTCTCTTGGAATGTGATGATAGCGGGGTATGCACAAAGCGGGCATTTCAAAGAGGCGGTGGAGGTGTTTCGCGAGATGCAGATGGCTGAGGTGCCCCCGAATTATGTGACTTTGGTTAGTGTTCTCCCCGCCATGTCCCGGCTTGGGGCGCTTGAGTTGGGGAAGTGGGTGCATTTGTATGCTGTGAGGAACAACATTGGGGTTGATGATGTGCTTGGGTCTGCGCTAATTGATATGTATGCCAAGTGTGGGAGCATTGAGAAGGCACTGCAGGTCTTTGAGGGGTTACCAAAAAGGAATGTGGTCACATGGAGTACTATTATTGCAGGGCTTGCGATGCATGGTCGAGCAAAAGATACACTCGATCACTTTGAGGATATGGAACGGGCTGGAGTTATGCCCAGCGATGTCACATATATCGGTCTCTTGAGTGCATGTAGCCATGCAGGTTTAGTCAATGAGGGTAGATGGTTTTTTGACCACATGGTTAGGGTATCTGGCTTAGAACCAAGGATTGAACATTACGGTTGCATGGTTGATCTATTAGGTCGAGCTGGTCTTTTAGAAGAGTCTGAAGAGCTTATACTGAACATGCCGATTAAACCTGATGATGTGATATGGAAGGCCTTGCTTGGTGCTTGTAAGATGCATGGAAATGTTGAGATGGGTAAACGTGTTGCAGAGCATCTGATGGAGTTGGCTCCTCATGACAGTGGCTCCTATGTGGCCCTGTCAAATATATATGCCTCTTTGGGAAATTGGGAAGGGGTTGCTAAAGTGAGGTTGATGATGAAGGAGATGGACGTAAGGAAAGACCCAGGGTGTAGTTGGATTGAGCTTGATGGAGTGATTCATGAGTTCCTTGTGGAAGATGATTCCCATCCCAAATCCAAAAAGATCCATTCAATGTTGCAGGAGATGTCAAGAAATTTGATATTGGTAGGCTATAGGCCAAACACTACACAAGTCTTGACCAACATGGATGAAGAAGACAAAGAAAGCTCCTTAAACTATCATAGTGAAAAGATTGCGATTGCTTTTGGCTTAATCAGCACACAGCCACAAACACCACTTCGGATTACTAAGAACCTTCGCATATGTGAAGATTGTCACTCTTCAATAAAACTAATCTCAAAAATATATAAACGGAAGATCATTGTAAGGGACCGAAAGCGCTTTCATCATTTTGTGAATGGCTCATGTTCTTGTATGGATTATTGGTAA 1896 0.4552 MNSTIFTSTTSLWPPSSFFPCKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1090 631 Pfam PPR repeat 398 422 IPR002885 -
Vvi2g1090 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 394 IPR002885 -
Vvi2g1090 631 Gene3D Tetratricopeptide repeat domain 297 603 IPR011990 GO:0005515
Vvi2g1090 631 Gene3D Tetratricopeptide repeat domain 17 178 IPR011990 GO:0005515
Vvi2g1090 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 110 IPR002885 -
Vvi2g1090 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Vvi2g1090 631 Pfam DYW family of nucleic acid deaminases 539 631 IPR032867 GO:0008270
Vvi2g1090 631 Pfam PPR repeat family 323 371 IPR002885 -
Vvi2g1090 631 Pfam PPR repeat family 223 268 IPR002885 -
Vvi2g1090 631 Pfam PPR repeat family 74 122 IPR002885 -
Vvi2g1090 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Vvi2g1090 631 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 568 IPR046960 GO:0003723|GO:0009451
Vvi2g1090 631 FunFam Pentatricopeptide repeat-containing protein 298 567 - -
Vvi2g1090 631 FunFam Pentatricopeptide repeat-containing protein At5g66520 16 174 - -
Vvi2g1090 631 Pfam E motif 441 503 IPR046848 -
Vvi2g1090 631 Gene3D Tetratricopeptide repeat domain 183 294 IPR011990 GO:0005515
Vvi2g1090 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 222 IPR002885 -
Vvi2g1090 631 FunFam Pentatricopeptide repeat-containing protein 190 288 - -
Vvi2g1090 631 NCBIfam pentatricopeptide repeat 77 112 IPR002885 -
Vvi2g1090 631 NCBIfam pentatricopeptide repeat 326 359 IPR002885 -
Vvi2g1090 631 NCBIfam pentatricopeptide repeat 225 258 IPR002885 -
Vvi2g1090 631 NCBIfam pentatricopeptide repeat 299 325 IPR002885 -
Vvi2g1090 631 NCBIfam pentatricopeptide repeat 194 224 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1090 Vvi-Chr2 17193880 17198277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1090 16 631 Glycoside Hydrolase AT3G49170 36.859 2.00e-138 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1090 - - vvi:100261359 1283.86