Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1079 ATGCTTTCTCTTCCTCTTCAATTATTGTCTTCATCACATAGTAGCAGCTTCCATTCCAAATCCCTGAATTTTAATACGATTGATGAAGCCCTCTCTTCCTTTAATCGAATGCTTCATATGCAACCTCCACCCTCAGTTGTTGATTTCGCCAAAATTTTAACCTCCATCGCTAACATGAAACACTACTCCACTGTGCTTTCTCTTTCTAAGCAAATGGATTCTCTTGGAATTCCCTCCGATGTTTACACTCTCGCCATCGTCATTAACTCTTTCTGCCATTTGAATCGGGTGGATTTCGGTTTCTCCGTCTTGGCGAAAATCTTCAAACTTGGGCATCAACCGGACACCGCTACCTTCACCACTCTGATTAGGGGCCTCTGTGTTGAGGGTAAAATTGGTGAAGCCCTCCACCTGTTTGATAAAATGGTTGGGGAAGGTTTTCAACCCAATGGGGTTACTTATGGAACTCTGATACATGGGTTATGTAAAGTGGGCAACTCTAGAGCCGCTATCAGGTTACTTAGGAGCATGGTACAAAAAAATTGTGAGCCTAATGTGATTACTTATAACACCATCATTGATTGCCTTTTTAAGGATAGACAAGTAAATGAGGCTTTGAACATTTTCTCTGAGATGATCGCTAAAGGCATTTCACCTAATGTTTCAACTTATAACTCAATAATTCATGGCCTATGCAAGTTCTCTGAGTGGAAGCATGTTGCAACACTGATGAATGAAATGGTAGATAGCAAGATAATGCCAAATGTAGTTATCTTTACCACATTGGTGGATGCACTCTGTAAAGAAGGAATGGTCACCATAGCACATGATGTAGTTGATGTGATGATTCAAAGAGGTGTGGAGCCTGATGTAGTCACCTACACTGCATTGATGGATGGACACTGTTTGCGATCTGAGATGGATGAGGCGGATAAAGTATTTGATACGATGGTTCGTAAGGGCTGTGCACCTAATGTTATCAGCTATAGTACCTTGATCAACGGTTATTGCAAGATTCAAAGGATAGATAAGGCCATGTATCTCTTTGAAGAAATGTGTCAACGAGAATTGGTTCCTAACATCGTGACTTACAACACTCTTATACATGGTTTATGCCATGTTGGAAGACTCCGGGATGCAATAGCACTTTTTCATGAGATGGTAGCTAGTGGCCAAATTCCAGATCTCGTTACTTACCGCATTTTATTAGACTATCTATGCAAAACTCGTCATCTAGATCAAGCTATGGCTATGCTGAAAGCTATTGAAGGTAGTAATTTGGCTCCTGATATACAAAGTTATAATATTGTCATTGATGGGATGTGTAGAGTTGGTGAACTTGAAGCTGCAGGGGATCTCTTTTCCAGTCTCTCCTCCAAAGGTTTGCATCCTGATGTTTGGACTTATACTATAATGATCAATGGGCTTTGTCTACAAGGGTTATTAGCTGAGGCAACTAAGTTATTTAGGGAAATGAATACAGATGGCTGCTCACCAGATGATTGCACTTACAATTTGATTACTCGAGGATTTTTACGAAATAATGAGACATTGAGTGCTATTCAACTTCTTCAAGAAATGCTTGGAAGGGGATTTTCCGCTGATGCATCCACCATCACATTGATAGTGGAAATGTTATCTGATGATGGATTGGATCAATCTGTAAAACAAATTCTACATGAGTTTGTGCAGTAA 1695 0.4012 MLSLPLQLLSSSHSSSFHSKSLNFNTIDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQSVKQILHEFVQ* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1079 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Vvi2g1079 564 Pfam PPR repeat 252 282 IPR002885 -
Vvi2g1079 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Vvi2g1079 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 114 IPR002885 -
Vvi2g1079 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Vvi2g1079 564 Pfam PPR repeat 503 532 IPR002885 -
Vvi2g1079 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Vvi2g1079 564 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 26 391 - -
Vvi2g1079 564 Pfam PPR repeat family 359 408 IPR002885 -
Vvi2g1079 564 Pfam PPR repeat family 289 338 IPR002885 -
Vvi2g1079 564 Pfam PPR repeat family 114 163 IPR002885 -
Vvi2g1079 564 Pfam PPR repeat family 184 233 IPR002885 -
Vvi2g1079 564 Pfam PPR repeat family 429 477 IPR002885 -
Vvi2g1079 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Vvi2g1079 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Vvi2g1079 564 FunFam Pentatricopeptide repeat-containing protein At5g39710 238 344 - -
Vvi2g1079 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 149 IPR002885 -
Vvi2g1079 564 SUPERFAMILY TPR-like 25 390 IPR011990 GO:0005515
Vvi2g1079 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Vvi2g1079 564 NCBIfam pentatricopeptide repeat 187 221 IPR002885 -
Vvi2g1079 564 NCBIfam pentatricopeptide repeat 433 466 IPR002885 -
Vvi2g1079 564 NCBIfam pentatricopeptide repeat 502 535 IPR002885 -
Vvi2g1079 564 NCBIfam pentatricopeptide repeat 118 150 IPR002885 -
Vvi2g1079 564 NCBIfam pentatricopeptide repeat 327 361 IPR002885 -
Vvi2g1079 564 NCBIfam pentatricopeptide repeat 152 186 IPR002885 -
Vvi2g1079 564 NCBIfam pentatricopeptide repeat 362 395 IPR002885 -
Vvi2g1079 564 NCBIfam pentatricopeptide repeat 397 430 IPR002885 -
Vvi2g1079 564 NCBIfam pentatricopeptide repeat 292 326 IPR002885 -
Vvi2g1079 564 NCBIfam pentatricopeptide repeat 223 256 IPR002885 -
Vvi2g1079 564 NCBIfam pentatricopeptide repeat 257 291 IPR002885 -
Vvi2g1079 564 NCBIfam pentatricopeptide repeat 468 500 IPR002885 -
Vvi2g1079 564 Gene3D Tetratricopeptide repeat domain 164 308 IPR011990 GO:0005515
Vvi2g1079 564 Gene3D Tetratricopeptide repeat domain 422 564 IPR011990 GO:0005515
Vvi2g1079 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Vvi2g1079 564 Gene3D Tetratricopeptide repeat domain 309 413 IPR011990 GO:0005515
Vvi2g1079 564 Gene3D Tetratricopeptide repeat domain 7 163 IPR011990 GO:0005515
Vvi2g1079 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Vvi2g1079 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Vvi2g1079 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1079 Vvi-Chr2 16889049 16890743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1079 202 561 Glycosyltransferase AT1G05670 29.086 1.31e-51 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1079 - - vvi:100244236 1100.12