Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1070 ATGGGGAAGGAAAGAAACTCAGAAATTGAAGATATTCACAACGCAGCCAGATCCGGTGACCTTCTAAAACTTCAATCCATTTGCAGTTCCAATCCTTTAGCAGTCAATTCCAGAGATAAGCACTCCAGAACCCCACTACATTTAGCCGCATGGGCTGGGCAGACACAGGTGGTAACCTATCTCTGCAAGCACAAGGCTGATGTTGGTGCTGCAGCGATGGACGACATGGGTGCAATTCACTTTGCTGCCCAGAAAGGACATCTAGAAGTCGTCCGCACTCTGCTTTCATCTGGGGCCTCAGTCAAAGCTATCACCCGCAAGGGCATGACCCCACTTCACTACGCAGCTCAAGGATCCCATCTCGATCTTGCCAAGTACTTGGTAAGGAAAGGCGGTAGTCTCAGTGCCAAGTCAAAAGCAGGAAAAACCCCTCTTGATCTTGCAGGCAGTGAAGAATTCCGCACTGTTTTGGTAGAATGTGAGAGGTTATCTAGGAAAGGAGATAAGAATGTTAAAGACAAAGTTGAAGAATCGGAAGAGCCAAAGCCATCAATCTTGGAAAAAGCAGAGAATTCTGATGGCAAAGCTGCTGCAGATGGAGATGGTGAAGAACACGAGGACACAGACGTCAAGAGGAAAGCTGATGAAGATAGTGAAGAACACGAGGACACAGACGTCAAGAGGAAAGCTGATGAAGATGGTGAAGTACAAGAGGACACGGATGTCAAGAGGAAAGCTGATGAAGATGGCACCAAGGAAGAAGCCTCGAAGGTACCGAAAAAGGCCAGAGTTGCTCTTAATCATCTTCTAAGCGCTGATTACACTCAAGAGAATGAAGAAAACATGTAA 849 0.4676 MGKERNSEIEDIHNAARSGDLLKLQSICSSNPLAVNSRDKHSRTPLHLAAWAGQTQVVTYLCKHKADVGAAAMDDMGAIHFAAQKGHLEVVRTLLSSGASVKAITRKGMTPLHYAAQGSHLDLAKYLVRKGGSLSAKSKAGKTPLDLAGSEEFRTVLVECERLSRKGDKNVKDKVEESEEPKPSILEKAENSDGKAAADGDGEEHEDTDVKRKADEDSEEHEDTDVKRKADEDGEVQEDTDVKRKADEDGTKEEASKVPKKARVALNHLLSADYTQENEENM* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1070 282 ProSiteProfiles Ankyrin repeat region circular profile. 41 68 - -
Vvi2g1070 282 ProSiteProfiles Ankyrin repeat profile. 41 73 IPR002110 GO:0005515
Vvi2g1070 282 SMART ANK_2a 74 103 IPR002110 GO:0005515
Vvi2g1070 282 SMART ANK_2a 107 136 IPR002110 GO:0005515
Vvi2g1070 282 SMART ANK_2a 41 70 IPR002110 GO:0005515
Vvi2g1070 282 SUPERFAMILY Ankyrin repeat 12 151 IPR036770 -
Vvi2g1070 282 ProSiteProfiles Ankyrin repeat profile. 74 106 IPR002110 GO:0005515
Vvi2g1070 282 MobiDBLite consensus disorder prediction 166 261 - -
Vvi2g1070 282 PRINTS Ankyrin repeat signature 42 57 IPR002110 GO:0005515
Vvi2g1070 282 PRINTS Ankyrin repeat signature 90 104 IPR002110 GO:0005515
Vvi2g1070 282 ProSiteProfiles Ankyrin repeat profile. 107 139 IPR002110 GO:0005515
Vvi2g1070 282 ProSiteProfiles Ankyrin repeat region circular profile. 107 139 - -
Vvi2g1070 282 Pfam Ankyrin repeat 43 69 IPR002110 GO:0005515
Vvi2g1070 282 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN 9 167 - -
Vvi2g1070 282 Pfam Ankyrin repeats (3 copies) 79 160 IPR002110 GO:0005515
Vvi2g1070 282 MobiDBLite consensus disorder prediction 166 263 - -
Vvi2g1070 282 Gene3D - 6 180 IPR036770 -
Vvi2g1070 282 ProSiteProfiles Ankyrin repeat region circular profile. 74 103 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1070 2 148 Miscellaneous Gene Families AT5G02620 33.113 8.61e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1070 - - vvi:100244354 547.354