Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1068 ATGCAGTTGTGGCGATTTATCAAACTTTCTTCATATTTATGTGCTTCTTCTACCATACCTTCACGCTTCCAAATTGGTAATACTGTGACTCCACTTCTACATCTGCAACTGCAATCAATAGACCGTTATCGAGCTTTCCACATTGGTCCTAGAAATGGGTTTGAGGAAAGTTCAAATTCAAGTTCAGGTTCAAGCCCCAATTTGGTGAAAGGAGCTTTTGATCTTATTGGTAGAAATGGGTTTGAAGGAATTTCAAATTCGAGGCCAGATTCAAGCTCCAATTTAGTGAAAGGATCTTTTGATATTGTTAGTAGCAATGGGGAGGAAAGTTCAAAATCAACTTCAACTTTGGGGAATAGGGCTTTTGATCTCATTAGTGGAAATGGGGTTGAGGGAAGTTCGAATTCCATTTCAAATTCTGCCAACCCAGCATTTGATTTTGTTGGCAGAAAAGGGGTTGAGGAAAGTTTAGAAGATGGTGTTGAGGAAAGTTCAGAAAAGGGTGTGGGTGAAAGTCCGAGTTTGGCAGACCGAGCTTATTTTGATGGTATTAGTACAAATGGGGTTGAGGAAAGTTTAAATCCTGAACACAGGGCTCTTGATGTTGTTACTAGAAATGGGGTTGAAGAGAGTTTGATTTCGGTAAACCAAACCTTTGATCTTGTTGGTGGAAATGATGTTGAGGAAAGAGTTTTAGTCAGTGATGCTGATAAATTATACAAAGCTATTGCCAATAATGCAAATCCTGAGAGTGACATGGAAAAAGCACTTGACCTGGTTGGCGTAGAGCTTACAACTGACTTGGTGATTGAGATACTAGGTAAGATTCATTTTGAGGAGAAAATGGCTTTTAGGTTCTTTATGTGGGCAGGTCATCAAGACTGTTATTCGCATGAGCCCCGAGCATACAATGAAATGATTGACATATTATCCAGCACAAAGTACAAGGTGAAGCAGTTTCGGATTGTTTGTGATATGCTTGATTATATGAAGAGAAATGACAAGAAGTCAGTTCCAGTTGAGGTTTTGTTGATGATTTTGAGGAAATACACAGAAAAGCATTTGGCCCATCTTCATAAATTTGCAAAGAAGAAGAAAATAAGGGTGAAGACCCAACCAGAAATTAATGCCTTGAACTTGCTGCTTGATGCTTTGTGCAAGTGCAGTCTTGTGGAGGATGCCCAAGCCATGTTCAGGAGGGTGAAGAACAAGGTTAAGCCCGATGCTAATACTTACAATATTTTGTTTTTTGGGTGGTGTCGGGTTAGAAACCCTAGTAGAGGAATGAGGGTTTTGGAAGAAATGATTGAAATGGGTCATACACCAGATAGTTTTACTTACAATACTGCAATTGATTCCTTTTGCAAAGCAGGGATGGTGACAGAGGCAACTGAACTCTTTGAGTTCATGAGAACAAAGGGTTCAACCATGTCTTCTCCTACTGCAAAAACATATGCAATCATGATTTTGGCTCTTGTACAGAGTGATAGAACTGAGGAGTGCTTTAAACTTATTAAAGATATGATAAACAGTGGTGTCCTTCCGGATGTTTCGACGTACAAGCAAGTGATTGAAGGGATGTGTTTGGCTGGAAAGGTTGAGGAAGCTTACAAGTTCTTGGAAGAGATGGGAAATAAAGGGTATCGTCCTGATATTGTTACTTATAATTGTTTTCTTGATGTACTATGTGAAAATAAAAAGAGCGAGGAAGCACTTGGGCTTTATGGCAGGATGATTGAGGCTGGGTGTGTGCCTAGTGTGCATACTTTCAATATGCTGATTTCAATGTTTTTTGAGATTGGTGAACCTGATGGGGCATTTGAGACGTGGCATGAGATGGATAAGAGGGGATGTGCACGGGATACTGACACTTACTGTGTGATGATTGAAGGGCTTTTTAATTGCAATAAAATGGAAGATGCATGTTTTCTCTTAGATGAGGTTGTAAACAAGGGAATAAAATTGCCATATCGGAAATTTGACTGCTTTTTGATGCAGCTTTCAATGATTGGTGATCTCCAAGCCATCCATAAGCTTTCAGAGCATATGAGAAAATTCTATAACCCTGCTATGGCAAGACGTTTTGCACTGAATCAGAAGCGGAGGAGCATGAGTTTAAGAGGAAAGTAA 2130 0.3967 MQLWRFIKLSSYLCASSTIPSRFQIGNTVTPLLHLQLQSIDRYRAFHIGPRNGFEESSNSSSGSSPNLVKGAFDLIGRNGFEGISNSRPDSSSNLVKGSFDIVSSNGEESSKSTSTLGNRAFDLISGNGVEGSSNSISNSANPAFDFVGRKGVEESLEDGVEESSEKGVGESPSLADRAYFDGISTNGVEESLNPEHRALDVVTRNGVEESLISVNQTFDLVGGNDVEERVLVSDADKLYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQDCYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTEKHLAHLHKFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKVKPDANTYNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNKGIKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMRKFYNPAMARRFALNQKRRSMSLRGK* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1068 709 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Vvi2g1068 709 Gene3D Tetratricopeptide repeat domain 438 529 IPR011990 GO:0005515
Vvi2g1068 709 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
Vvi2g1068 709 NCBIfam pentatricopeptide repeat 588 621 IPR002885 -
Vvi2g1068 709 NCBIfam pentatricopeptide repeat 519 552 IPR002885 -
Vvi2g1068 709 NCBIfam pentatricopeptide repeat 624 654 IPR002885 -
Vvi2g1068 709 NCBIfam pentatricopeptide repeat 445 475 IPR002885 -
Vvi2g1068 709 NCBIfam pentatricopeptide repeat 553 587 IPR002885 -
Vvi2g1068 709 NCBIfam pentatricopeptide repeat 411 444 IPR002885 -
Vvi2g1068 709 NCBIfam pentatricopeptide repeat 484 517 IPR002885 -
Vvi2g1068 709 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Vvi2g1068 709 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Vvi2g1068 709 Pfam PPR repeat family 550 597 IPR002885 -
Vvi2g1068 709 Gene3D Tetratricopeptide repeat domain 614 687 IPR011990 GO:0005515
Vvi2g1068 709 Gene3D Tetratricopeptide repeat domain 544 613 IPR011990 GO:0005515
Vvi2g1068 709 Gene3D Tetratricopeptide repeat domain 235 437 IPR011990 GO:0005515
Vvi2g1068 709 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Vvi2g1068 709 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 262 709 - -
Vvi2g1068 709 Pfam PPR repeat 379 403 IPR002885 -
Vvi2g1068 709 Pfam PPR repeat 624 653 IPR002885 -
Vvi2g1068 709 Pfam PPR repeat 512 543 IPR002885 -
Vvi2g1068 709 Pfam PPR repeat 438 471 IPR002885 -
Vvi2g1068 709 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 585 IPR002885 -
Vvi2g1068 709 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 621 655 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1068 Vvi-Chr2 16675912 16678041 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1068 431 685 Glycosyltransferase AT1G05670 27.059 1.50e-21 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1068 - - vvi:100259722 1362.44