Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1065 ATGAATTCTTCACTGCCCAAGCTCCTCAAACACGTCTTTTCCATCCACAATTTCCGTTGCTCGTACTCTTCTTTCTCTGTGACTGTGGTTCACCAAATCGCAAAGGCGTTTCACCACAACAACTTCAGTTTCTTCAACTCTGGTTCACTTCCAAATCTACAGCCCGCCCACCTTGAACCAGTCGTCTTCCAACTCCGCTCCAACCCCACCTCCGCCCTCCGGTTCTTTGAATGGGCTGAGAATTTTCTGGGTCTGTGCCACCCGGTTCAGTCCTTCTGTGGCATTGCCCATGTGCTGCTCCGGCACCGAATGTTTGATCCGGCAACGCGGGTTTTTGACCGAATGGTCGGGCAATTCGGGAATTTGGAGGTTTTGGGTGAGTTTCATGGCAGTTTTCGGAATTATGGTTCGAACCCGAGTACAGTTTATAGCTTTTTGTTGCATTGTTATTGTAGGAATGGCATGGTTGATAGGGCTGTTGATACTTTTGCTTGGATGTCTAAGATGGGAGTTTCAATTTCGCATTATGCGGCATCAGAAATGTTGGATTTATTGATTGATTCAGATCGCATAGATGTTATTCTTGAAAATTATGAAGAGATGTGTAAAGGCTTAGGTGTCTATGAGTTTGTTTTCAACAGTTTTCTCAAGAGGGGTGAGGTTGAAAAGGGGTTGAATTTTCATCGGGCATTGGTCGAAAGAGGCTTAGTTCCCAAGATAGTTGATTGTAATAAGATCTTGAAAGGCCTTTGCATGGGAAATCAGATAGGCGTTGCTTCGGATTTCTTTGATATGATGGTAAGGAGTGGTCCAAGCCCAAATTTGGTGACATTTAGCACGTTGATTAATGTGTATTGTAAGGAGTTGAGATTGGATGAGGCATTTAGTCTTTATAATCTTATGATTGAGAAGGGCATAGTTCCAGATTTGGTTATTTATAGCATTTTAATTAATGGTCTTTTCAGGGCAGGAAAGTTGGAGGAGGGAAATTCTCTTTTCTCCATGGCTTTAGCTAGAGGTGTTAAGATGGATGTGGTGATTTTCAGTTCAATTATGGATGCATATGTGAGGGTTGGAGATTTGGGAAAGGCAATTGAGGTATATACAAGAATGTTGAAGGAAGGGATCTCTCCAAATGTGGTTACTTACAGCATTCTTATAAATGGGTTATGTCGAAATGGTCGTGTCCTAGAGGCTTGTGGGGTCTTTGGTCAGATTTTGAAACAGGGTTTAGAACCGTCAGTGTTGACTTATAGTAGTCTCATTGATGGCTTTTGCAAATCTGAAAATTTGAGAGATGGGTTTGGTCTGTATGGGATTATGCTAAGGAAGGGCCACGTTCCTGATGTTGTTGTCTGTAGTATGCTTATAAATGGTCTTAGCCGACAAGGGATGATGGATGAGGCTCTCAGGTTTTTCTTCCAAGCTGTGAAAAGGGGTTTAACACTCAATAACTATTTGTTTAATGCCTTAATTGATGGTTGTTTTAGATTGAAACGAACAAGGGATGGTCTGAAGATGTACATCCTCATGGGCATGTATAAAGTAATCCCAGATGTAGTTACTTACACTGTGCTTGTTAAAGGGCTTGCTGAGCAAGGGAGATTGGATGAGGCATTGGCATTGTTCTTCCAATTGCTGAAGAAGGGGTTTTCACCAGATCATATAATCTATTGCACTCTCATTGATGGATTCTGCAAGAAAAGGGATCCAGCAACTGGATTACAGATTTTCAAGCTGATGCAAAGCAATGGAATATTTCCAGATATTTGCATTTATAATGTTCTCATTAATATGTTTTTCAGGGAAGGCTGTGTGGAGAATGTGCTGGAATTATTGAGGGAAATCATTAAGTATGGGTTAGAACCCGATATTGTGACATACAACACAATGATATGTGGTTACTGCTCTTTGAAAATATTTTCCAAGGCCATTAAACTTTTTGAAGTTCTGAAATGTGGACGGACCCAGCCAAATGCTATTACTTTTACCATTTTGATTGATGCTTACTGTAAGGATGGTAGAATGGACGATGCAATGTTGATATTCTCCTCTATGCTGGAAAGGGGTCCTGAACCTAACATATTAACATATAGTTGTTTAATTGATGGCTATTTTAAAACTGAAAATACAGAGAGTGCCTTTGAGCTTTATGAAAAGATGCTTGGTGACAGAGTCTCTCCAAACATTGTGAGTTATAGCATCCTCATTGATGGTCTTTGCAAAAAGGGGCTAATGGAGGAAGCATCACTTGCCTTTCAATGTGCTATAGGCAGGCATTTGTTGCCTGATGTAATAGCCTATGGGATTCTGATACGTGGTTACTGCAAGGTTGGAAGATTAGCTGAAGCCATGATGTTGTATGATCATATGTTGGTAAATGGCATCATGCCAGATGATCTTTTGCAAAAAGCACTTGCAGAGTATGGTTTTCAAGATAGTCAGGCAAAAAATTGTGTACTCAACTGA 2469 0.4075 MNSSLPKLLKHVFSIHNFRCSYSSFSVTVVHQIAKAFHHNNFSFFNSGSLPNLQPAHLEPVVFQLRSNPTSALRFFEWAENFLGLCHPVQSFCGIAHVLLRHRMFDPATRVFDRMVGQFGNLEVLGEFHGSFRNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAEYGFQDSQAKNCVLN* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Vvi2g1065 822 SUPERFAMILY TPR-like 96 409 IPR011990 GO:0005515
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 659 693 IPR002885 -
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 557 590 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 451 484 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 592 625 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 142 173 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 311 345 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 381 415 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 243 274 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 417 450 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 487 520 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 626 659 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 276 309 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 521 554 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 346 380 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 661 694 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 697 730 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 767 799 IPR002885 -
Vvi2g1065 822 NCBIfam pentatricopeptide repeat 731 753 IPR002885 -
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Vvi2g1065 822 SUPERFAMILY HCP-like 591 792 - -
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Vvi2g1065 822 Gene3D Tetratricopeptide repeat domain 754 806 IPR011990 GO:0005515
Vvi2g1065 822 Gene3D Tetratricopeptide repeat domain 617 685 IPR011990 GO:0005515
Vvi2g1065 822 Gene3D Tetratricopeptide repeat domain 686 753 IPR011990 GO:0005515
Vvi2g1065 822 Gene3D Tetratricopeptide repeat domain 206 325 IPR011990 GO:0005515
Vvi2g1065 822 Gene3D Tetratricopeptide repeat domain 62 192 IPR011990 GO:0005515
Vvi2g1065 822 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 415 645 - -
Vvi2g1065 822 Pfam PPR repeat family 273 321 IPR002885 -
Vvi2g1065 822 Pfam PPR repeat family 344 392 IPR002885 -
Vvi2g1065 822 Pfam PPR repeat family 623 672 IPR002885 -
Vvi2g1065 822 Pfam PPR repeat family 413 461 IPR002885 -
Vvi2g1065 822 Pfam PPR repeat family 518 567 IPR002885 -
Vvi2g1065 822 Pfam PPR repeat family 693 742 IPR002885 -
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Vvi2g1065 822 Gene3D Tetratricopeptide repeat domain 457 616 IPR011990 GO:0005515
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 729 763 IPR002885 -
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 694 728 IPR002885 -
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 623 IPR002885 -
Vvi2g1065 822 Pfam PPR repeat 592 621 IPR002885 -
Vvi2g1065 822 Pfam PPR repeat 142 170 IPR002885 -
Vvi2g1065 822 Pfam PPR repeat 487 511 IPR002885 -
Vvi2g1065 822 Pfam PPR repeat 760 791 IPR002885 -
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 624 658 IPR002885 -
Vvi2g1065 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 764 798 IPR002885 -
Vvi2g1065 822 Gene3D Tetratricopeptide repeat domain 326 433 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1065 Vvi-Chr2 16654146 16656614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1065 464 808 Glycosyltransferase AT1G05670 28.329 5.03e-45 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1065 - - vvi:104882747 1639.01