Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1038 ATGGCGATGGCCACACTTTCAAGACGACTCCACCGTCTCCTTCTCTCAAACCCCAAAACTTGTCAGTTCTCCATTCCCTTTTCCACTTACCTCTCTTCTCACGAAAGCTCCGATTCAAGCTCCGATTCTGACTCCGTCTCCGATTCCGACAAACTCACTGTCGACCCTATCGCTGATTCACCGCCGACTGACACCACTCAGAATCGCATGGTGGTGGATCGGCCTTTGGAGAACGGCTTGGATGTTGGGATTTACAAGGCAATATTGGTGGGGAAGGCAGGACAGACACCATTGCAGAAGAGGCTGAGGAGTGGAAGAATGGTGACCTTGTTTTCGGTTGGGACAGGTGGGATTCGGAACAACAGGAGGCCATTGGATAATGAGGATCCAAAAGAGTATGCTAATCGAAGTGCTGTTCAGTGGCATAGGGTCACTGTGTATCCTGAGAATTTGGGGAATATTGTAATGAAGCATGTCTCACCTGGTTCAGTTTTGTATTTGGAGGGGAATTTGGAGACTAAAATCTTTACCGATCCAGTAACTGGTCTTGTTCGACGTATACGAGAGGTCGCCATTCGAAGAAATGGTCGCCTTGTGTTTTTGGGAAAAGGAGGTGATGGCGATCAAGCCTCAAACGTGGAACTGAAAGGCGCCGGCTACTATTGA 666 0.488 MAMATLSRRLHRLLLSNPKTCQFSIPFSTYLSSHESSDSSSDSDSVSDSDKLTVDPIADSPPTDTTQNRMVVDRPLENGLDVGIYKAILVGKAGQTPLQKRLRSGRMVTLFSVGTGGIRNNRRPLDNEDPKEYANRSAVQWHRVTVYPENLGNIVMKHVSPGSVLYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRLVFLGKGGDGDQASNVELKGAGYY* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1038 221 FunFam single-stranded DNA-binding protein, mitochondrial 83 202 - -
Vvi2g1038 221 Gene3D - 83 202 IPR012340 -
Vvi2g1038 221 Pfam Single-strand binding protein family 86 194 IPR000424 GO:0003697
Vvi2g1038 221 CDD SSB_OBF 88 194 IPR000424 GO:0003697
Vvi2g1038 221 ProSiteProfiles Single-strand binding (SSB) domain profile. 84 199 IPR000424 GO:0003697
Vvi2g1038 221 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN 44 202 IPR011344 GO:0003697|GO:0006260
Vvi2g1038 221 SUPERFAMILY Nucleic acid-binding proteins 83 196 IPR012340 -
Vvi2g1038 221 MobiDBLite consensus disorder prediction 34 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1038 Vvi-Chr2 15829114 15840262 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1038 K03111 - vvi:100258550 408.297