Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1028 ATGGCGAGTGGTGGAAGCTATGGCAATTCGAGCCAAAAGATCAACTACGTTTTCAAAGTGGTTATGATCGGAGACACCGAAGCTACAACCGGGGTTGAGTCCCAGACTCGAACCCTCGTCATCCGACGCAAGAGTGTCAAGGCTCAGATCTGGGACACTACTGGCCAAGAACGACACGGAGCCGTTACAAGTGCGTATTACAGGAGTGCTGTTGACGCAATGCTGGTTTACGACATAACTAAACGCCAAAGTTTTGACCACATACCCCGATGGTTGGAAGAGTCACGTGGTCACGCTGATAAGACCATTCTCATCATTCTGATTGGCAATAAAACTGATCTCAAGGAACAGCAAACAAGAACCAGCCGCCATCCAAAAACGACTTGCACTTTTGGACTTCAAAACAGCCCCGTGCATGATTGA 423 0.4846 MASGGSYGNSSQKINYVFKVVMIGDTEATTGVESQTRTLVIRRKSVKAQIWDTTGQERHGAVTSAYYRSAVDAMLVYDITKRQSFDHIPRWLEESRGHADKTILIILIGNKTDLKEQQTRTSRHPKTTCTFGLQNSPVHD* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1028 140 Gene3D - 10 132 IPR027417 -
Vvi2g1028 140 Pfam Ras family 25 119 IPR001806 GO:0003924|GO:0005525
Vvi2g1028 140 MobiDBLite consensus disorder prediction 123 140 - -
Vvi2g1028 140 PRINTS Transforming protein P21 ras signature 101 114 - -
Vvi2g1028 140 PRINTS Transforming protein P21 ras signature 39 61 - -
Vvi2g1028 140 SMART rab_sub_5 18 135 - -
Vvi2g1028 140 MobiDBLite consensus disorder prediction 117 140 - -
Vvi2g1028 140 NCBIfam small GTP-binding protein domain 25 121 IPR005225 GO:0005525
Vvi2g1028 140 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 121 IPR027417 -
Vvi2g1028 140 SMART ras_sub_4 15 140 - -
Vvi2g1028 140 ProSiteProfiles small GTPase Rab1 family profile. 1 140 - -
Vvi2g1028 140 PANTHER - 25 122 - -
Vvi2g1028 140 FunFam Ras-related protein Rab-1B 26 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1028 Vvi-Chr2 15539192 15539668 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1028 K07904 - vvi:100262838 186.422