Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1004 ATGTTGTCATCTCCACCACTAGCTATTCACCAAGGACCAAGAAAAAGGGGCAAGGGAAAGAGGGAGCCACCACTTGAAAGACAACATCTCCTCCCTTTTTGTTTTCATGTGGGAAGTCCAACAGGTACATGCATTGTGCTAGTGAAATTCACTTTCAAGCAGCAAAAAGAATTGTTAGATATGTCAAGGGGTGAAGGGGAACAAAAACATGTTGGCAGAATCTTAGAGTTTTTTAAAACAACAGAAGGTGAAGATTATTTTAGGGTTCAATGGTTTTATAGAGCTGAAGATACAGTTATGAAAGAAGAAGCTGCTTCCCATGACAAGAAGCGCATATTCTGTTCCACTATAATGAATGATAATTCACTAGATTGTATTATTTCTAAAGTCAATGTTCTAGAACTAACTCCTAGGGTAAGTTTGAAATTGGACTCTATTCCACCATTTGATTATTATTACGATATGAAGTACAATGTGGAATATTCAACATTTCACACCTTGCTAAGTGTGAAGGGTTATGATTTAGTCTCACCTAATTGCATTGAGACTCCCCTTAGTGTAGCCAATACGACTTTCCCAGAGGATATGGATGGTTGCAAACCTGACAAAGCCGAATTAGCATTATTAGATCTTTATTCTGGTTGTGGTGGAATGTCAACTGGCTTGTGCCTTGGTGCCAAGCTTTCTTGTGTTAATCTTGTGACGAAGTGGGCCCTTGATTTTGATAAATCAGCTTGTGAGAGTTTGAAATTAAATCATCCAGAAACTCAAGTCAGGAATGAAACTGCCGAGGATTTTCTGGATCTATTAAAAGAATGGGAAATGCTATGTGAACAGTATGCACTCAATCTTGTAGAAAGAAAATCCCAGTCTAGGTCAAATGTCTTGAGAACATCCAAGAGCAATATAAATTCTCCACATGACATTAAAGTTGCCACTGATGAACTTGAAATTTTGAAACTTGTTGATATTTGTTATGGTGATCCCAGCGAAACAGGCAAACGTGGGCTGAAATTTAAGGTGCGCTGGAAGGGTTATGGTCCAAGTGAAGATACATGGGAACCAATTGAAGGATTGAGTAATTGCCAGGAAGGGATATACGATTTTGTAAGAAATGGACTGAAATCTAAAATTTTGCCACGCCCAGGTGATGTTGATGTTATCTGTGGGGGCCCTCCTTGCCAAGGGATTAGTGGTTATAATCGCTTTAGAAATGTCGATTCCCCACTTTCTGATGAAAGAAATCACCAAATAGTAATCTTCATGGACATAGTGAAATTCTTAAAGCCCAAATATGTGTTAATGGAAAATGTGGTTGACCTATTAAAGTTGGATAAAGCTTCTTTGGGAAGATATGCCATTAGCCGTTTGGTGCACATGAAATACCAAGCAAGGCTAGGAATGATTGCTGCAGGCTGTTATGGTCTTCCACAATTTCGGTTGCGTGTTTTCCTGTGGGGTGCTCATCCTGGTGAGAGTCTACCCCAATTTCCACTTCCTACGCATGATGTTGTTGCAAAATATTGGCCTCCATCTGAGTTTGAGTGCAATATTGTTGCTTATGATGAAGGCCAACCTCGTGAACTAGAAAAAGCCGTTGTTCTTCGTGATGCTATATCTGATCTTCCAGCTGTCACAAACTATGAAACTCGTGATGAGATGCTTTATGGAAAGCCTCCAGAAACAGAGTTTCAAAAATATATAAGGTCAACTAAAGATGCGATGGCTGGTTCTTCATCAAGTGGTATTACAAAAGGGTACAACTCCATACTATATGACCATCGGCCTTACCCATTAAACGAGGATAATTATTTACGGATTTGTCAAATTCCTCGAAGGAAGGGAGCAAATTTCAGGGACCTCTCCGGTGTAATTGTAGGAACTGATAATGTGGCTGTACGGGATCCAACAATGAAGCCAATACTTTTGCCATCTGGACATCCACTGGTACCAGATTGCGTCTTTTCTTATGAACAAGGGAAGTCTAAAAGGCCATTTGCAAGATTATGGTGGGATGAGACCGTGCCAACTGTATTGACATTTCCATATCTTCGCAACCAGGCAATATTACATCCAGAGCAGGACCGTGTCCTCACCATACGCGAGTGTGCAAGGTTGCAAGGCTTTCCTGATTATTATAGGTTCCGTGGGACAGTTAAAGAGAGATACTGTCAAATTGGAAATGCAGTTGCATTTCCAGTTGCACGAGCCTTGGGATATATGCTGGGGATGGCGTTTCAGAATCAGAGTGGGAATGAAGCGCTCGCAACTCTTCCACTCAAGTTTTCTCATTCAATGGTCTAG 2304 0.4067 MLSSPPLAIHQGPRKRGKGKREPPLERQHLLPFCFHVGSPTGTCIVLVKFTFKQQKELLDMSRGEGEQKHVGRILEFFKTTEGEDYFRVQWFYRAEDTVMKEEAASHDKKRIFCSTIMNDNSLDCIISKVNVLELTPRVSLKLDSIPPFDYYYDMKYNVEYSTFHTLLSVKGYDLVSPNCIETPLSVANTTFPEDMDGCKPDKAELALLDLYSGCGGMSTGLCLGAKLSCVNLVTKWALDFDKSACESLKLNHPETQVRNETAEDFLDLLKEWEMLCEQYALNLVERKSQSRSNVLRTSKSNINSPHDIKVATDELEILKLVDICYGDPSETGKRGLKFKVRWKGYGPSEDTWEPIEGLSNCQEGIYDFVRNGLKSKILPRPGDVDVICGGPPCQGISGYNRFRNVDSPLSDERNHQIVIFMDIVKFLKPKYVLMENVVDLLKLDKASLGRYAISRLVHMKYQARLGMIAAGCYGLPQFRLRVFLWGAHPGESLPQFPLPTHDVVAKYWPPSEFECNIVAYDEGQPRELEKAVVLRDAISDLPAVTNYETRDEMLYGKPPETEFQKYIRSTKDAMAGSSSSGITKGYNSILYDHRPYPLNEDNYLRICQIPRRKGANFRDLSGVIVGTDNVAVRDPTMKPILLPSGHPLVPDCVFSYEQGKSKRPFARLWWDETVPTVLTFPYLRNQAILHPEQDRVLTIRECARLQGFPDYYRFRGTVKERYCQIGNAVAFPVARALGYMLGMAFQNQSGNEALATLPLKFSHSMV* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1004 767 ProSitePatterns C-5 cytosine-specific DNA methylases active site. 386 398 IPR018117 -
Vvi2g1004 767 Pfam Chromo (CHRromatin Organisation MOdifier) domain 332 370 IPR023780 -
Vvi2g1004 767 Gene3D DNA Methylase, subunit A, domain 2 534 708 - -
Vvi2g1004 767 ProSiteProfiles C-5 cytosine-specific DNA methylase (Dnmt) domain profile. 206 749 IPR001525 GO:0008168
Vvi2g1004 767 SMART chromo_7 315 374 IPR000953 -
Vvi2g1004 767 ProSiteProfiles Chromo and chromo shadow domain profile. 316 381 IPR000953 -
Vvi2g1004 767 FunFam DNA (cytosine-5)-methyltransferase 1 534 708 - -
Vvi2g1004 767 PANTHER CYTOSINE-SPECIFIC METHYLTRANSFERASE 63 763 - -
Vvi2g1004 767 Pfam C-5 cytosine-specific DNA methylase 382 739 IPR001525 GO:0008168
Vvi2g1004 767 Pfam BAH domain 66 165 IPR001025 GO:0003682
Vvi2g1004 767 ProSiteProfiles BAH domain profile. 50 168 IPR001025 GO:0003682
Vvi2g1004 767 SMART BAH_4 51 168 IPR001025 GO:0003682
Vvi2g1004 767 SUPERFAMILY Chromo domain-like 307 380 IPR016197 -
Vvi2g1004 767 PRINTS Cytosine-specific DNA methyltransferase signature 207 223 IPR001525 GO:0008168
Vvi2g1004 767 PRINTS Cytosine-specific DNA methyltransferase signature 429 443 IPR001525 GO:0008168
Vvi2g1004 767 PRINTS Cytosine-specific DNA methyltransferase signature 475 488 IPR001525 GO:0008168
Vvi2g1004 767 CDD CD_CMT3_like 315 371 - -
Vvi2g1004 767 Gene3D Vaccinia Virus protein VP39 208 759 IPR029063 -
Vvi2g1004 767 Gene3D - 44 153 IPR043151 -
Vvi2g1004 767 MobiDBLite consensus disorder prediction 1 23 - -
Vvi2g1004 767 NCBIfam DNA (cytosine-5-)-methyltransferase 383 738 IPR001525 GO:0008168
Vvi2g1004 767 ProSitePatterns Chromo domain signature. 339 359 IPR023779 -
Vvi2g1004 767 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 206 742 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1004 Vvi-Chr2 14943456 14983872 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1004 K00558 - vvi:100255190 1447.57