Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1002 ATGAAAGAGTTGGGTTGTGAGCCCAATGTTGTGACATACGATACAATTATCAAGCTTTTGTGCGAACATGGGAGAATTAGAGAAGCCTATGGGGTGCTCGATCAAATGCGTGAGAAGGATTGTGCCCCGAATGTGATGACTTATCATTGCTTCTTCGGGTGTCTTGAGAAGCCTAAACAGATTTTTCGGATGTTTGATAGGATGATCAATAGTGTGGGGGGCCTAGGTAGGATGGACACTTACGTGATGCTTATGAAGAAGTTTGGGAGGTGGGGCATTCTTCTACTTCGACCTGTTTTTATAGTTTAG 309 0.4369 MKELGCEPNVVTYDTIIKLLCEHGRIREAYGVLDQMREKDCAPNVMTYHCFFGCLEKPKQIFRMFDRMINSVGGLGRMDTYVMLMKKFGRWGILLLRPVFIV* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1002 102 Gene3D Tetratricopeptide repeat domain 1 93 IPR011990 GO:0005515
Vvi2g1002 102 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 1 91 - -
Vvi2g1002 102 Pfam PPR repeat family 8 54 IPR002885 -
Vvi2g1002 102 NCBIfam pentatricopeptide repeat 11 45 IPR002885 -
Vvi2g1002 102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1002 Vvi-Chr2 14734139 14734447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1002 1 88 Miscellaneous Gene Families AT4G11690 35.165 1.63e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1002 - - vvi:100253966 171.785