Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0898 ATGCATATGAAAAAAACCGGTTTTATGGAAAAGGCAAGAAGCTTCTTTATGCAGATGGGTAATTTGAGGGACCAAAGCTCCTGGAATATAATGATAGTTGGATGTGGAATGAAGGGTCAAAGGAGAAAAACTTGCGAGCTTGTGTCTCATGTGGAAGAAGATGGCTATAGGCCTAATTCCATCTCATTTACTTCTTTACTCTCATTTTGTAGTCATTCTGGCTTGATTGAAGAAGACACTGCTTGCAATTTCTGCAATCATGTACAAGTTCACTCTTAG 279 0.3871 MHMKKTGFMEKARSFFMQMGNLRDQSSWNIMIVGCGMKGQRRKTCELVSHVEEDGYRPNSISFTSLLSFCSHSGLIEEDTACNFCNHVQVHS* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0898 92 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Vvi2g0898 92 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 24 58 IPR002885 -
Vvi2g0898 92 Gene3D Tetratricopeptide repeat domain 2 90 IPR011990 GO:0005515
Vvi2g0898 92 NCBIfam pentatricopeptide repeat 27 59 IPR002885 -
Vvi2g0898 92 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5 78 IPR046960 GO:0003723|GO:0009451
Vvi2g0898 92 Pfam PPR repeat 26 55 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0898 Vvi-Chr2 10872241 10872519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0898 5 78 Glycoside Hydrolase AT3G49170 35.135 9.49e-09 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0898 - - vvi:104879324 136.732