Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0872 ATGGAGGAGGGAGGGAATTGGAGAGAAATGGTGACCAAGATGCTGCCACCAGGAGCTTCTCTCCCAGACGAAGTATCCGATCTCGATTACTCCATAGCTATAGAGTACGAGGGCCCTCCCGTGTCCTACAAGCTCCCGACAGTCGAACCCCTTGATGTAAATTCATCTGCAATTCCAACTGCATCAATTGCAGAAACCCTTTCTGAATCGCAGAGATCGGTGTCTCTCACTGGTGCCCCTGTAATTGAACCCATTCCGTTGCCCGTATCTTGTATTGCTGGTGTCACCAGTTCTCCAGCACAAAGTCCGAGGGTTTCTGGGAGCTCGGAGTCAGTAGTGTCAGTTTTGCAGAACCCTGATTTTTCCTCAGCGTCTCCCTCGGTGTCACCGGGTTCGGTCCACAATCCTCAGAGTAATGCTACTAAACAGGTGGTGAGTGAGGTGAAGAGGGTGCCTGTGGTCACATTCAATACTGTTGATAGATCAGAGAGGAAAGTGGTAGAAGTGGAGAAGCCCGTTTTTGCTGAGTATGTTGGGGTTTCGAAGGGGAAGAGGGAGAGGAAGAAAAAGAGAGTTTGTTACAGGTGTGGAAAGGGAAAGTGGGAAACGAAAGAGGCCTGTCTGGTTTGTGATGCCAAGTATTGCAGCAGTTGCTTGCTTAGGGCTATGGGGTCAATGCCTGAAGGGCGTAAGTGTGTGACCTGCATTGGCGAGCCAATTGATGAATCGAAGCGGTTGAAATTGGGAAAACATTCAAGGTTGTTATCTAGATTGCTCAGTCCTTTGGAAGTCAAGCAGATAATGAAAGCAGAGAAAGAGTGTTCTGCAAATCAGCTTCGACCTGAGCAATTGATTGTGAATGGATTCCCTTTGAAGCCAGAAGAAATGGCTGAATTACTTGGATGTGCTTTACCTCCCAGAAAGTTGAAGCCTGGTAGATATTGGTATGACAAGGAATCTGGCCTTTGGGGCAAGGAGGGAGAGAAACCTGATAGAATCATAAGTTCGAACTTGAGTTTCTCCGGGAAACTTAGTCCTGATGCGAGTAATGGAAACACTGAAGTTTACATCAATGGCCGAGAAATTACAAGACTGGAACTGAGAGTGCTAAGGCTGGCAAATGTACAGTGTCCACGGGACACACATTTCTGGGTCTATGATGATGGCCGTTATGAGGAGGAAGGTCAGAATAATATCAGGGGAAATATCTGGGAAAAGGCATCAACTCGGTTCGTCTGTGCCTTGTTTTCCTTGCCAGTGCCCCATGGTCAACTTCAAGGACTGAGAGATGAGGCTAGCAATTATACTACTGTCCCAAATTATCTAGAGCAGAAAAAGGTTCAGAAGCTTCTCCTAATTGGACTTCATGGCTCTGGAACCAGCACTATATTCAAGCAGGCCAAATTTTTGTATGGGAACAGGTTTAGTGCTGAAGAATTGCAGGATATTAAGTTAATGATTCAAAGCAACATGTACAGATATTTAAGCATTTTGCTTGATGGTCGGGAGCGCTTTGAGGAGGAAGCATTGTCAAAGCTGAAAGCATCAGATTCCCAGGATCAAATTGCTGAAGCAGGTGAAGAGCTTGAGTCCAGCGAAGCTGGTCAGTGTATCTACTCTATCAACCCCAGGTTGAAGCATTTCTCTGACTGGCTCCTGGATATCATAGCAACTGGAGATCTGGATGCTTTCTTCCCTGCAGCAACTCGGGAGTATGCTCCATTAGTTGAAGAGGTGTGGAAGGATCCTGCCGTACAGGAAACATATAAAAGAAAGGATGAGCTTCACTTTCTTCCAGATGTTGCTGAGTATTTCTTAAGCCGGGCTGTTGAGGTCTCAAGCAATGAATATGAACCTTCAGAGAGGGACATACTATATGCAGAAGGGGTCACACAAGGGAATGGTTTGGCTTTCATAGAATTCTACCTCGATGATCGTAGTCCAATGTCTGAAACCTACACAGACAATCAGGAAGCTCCATTGCAGCCTGTGACTAAATACCAACTTATAAGGGTAAATGGCAAGGGAATGAGCGAGGGTTGCAAGTGGGTGGAAATGTTTGAAGATGTTCGAGCTGTAGTGTTCTGTGTTTCCCTAAGTGACTATGATCAAATGTCAATTGGCACAGAGAACAGTGGGAGCGGAACCCAGCTTCAAAACAAGATGATGCAATGCAAGGAGCTTTTTGAGACGATGGTGAGGCACCCATGCTTCAAGGAGACTCCTTTTGTTTTGATACTGAACAAGTATGATGTATTTGAGGAGAAGGTGAATCGGGTACCTCTAAGTAGTTGTGAATGGTTCAACGATTTCAGTCCTGTCCGGCCCCATCACAACAACCAGTCTCTAGCCCACCAGGCTTACTACTACATTGCAATGAAGTTCAAAGACCTTTATGCTTCCCTCACAAGTCAAAAGCTATTTGTGGCCCAAGCTAGGGCAAGGGACAGAGTAACCATAGACGAGGCATTCAAGTATATAAAGGAGGTTCTGAAGTGGGATGATGAGAAAGAGGAGACCTACTACGGGGGAGTGGAGGATTCCTTTTATAGCACAGACATCAGCTCCTCGCCTTTTATTAGGCAAGAGTGA 2592 0.4599 MEEGGNWREMVTKMLPPGASLPDEVSDLDYSIAIEYEGPPVSYKLPTVEPLDVNSSAIPTASIAETLSESQRSVSLTGAPVIEPIPLPVSCIAGVTSSPAQSPRVSGSSESVVSVLQNPDFSSASPSVSPGSVHNPQSNATKQVVSEVKRVPVVTFNTVDRSERKVVEVEKPVFAEYVGVSKGKRERKKKRVCYRCGKGKWETKEACLVCDAKYCSSCLLRAMGSMPEGRKCVTCIGEPIDESKRLKLGKHSRLLSRLLSPLEVKQIMKAEKECSANQLRPEQLIVNGFPLKPEEMAELLGCALPPRKLKPGRYWYDKESGLWGKEGEKPDRIISSNLSFSGKLSPDASNGNTEVYINGREITRLELRVLRLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFVCALFSLPVPHGQLQGLRDEASNYTTVPNYLEQKKVQKLLLIGLHGSGTSTIFKQAKFLYGNRFSAEELQDIKLMIQSNMYRYLSILLDGRERFEEEALSKLKASDSQDQIAEAGEELESSEAGQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEEVWKDPAVQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSERDILYAEGVTQGNGLAFIEFYLDDRSPMSETYTDNQEAPLQPVTKYQLIRVNGKGMSEGCKWVEMFEDVRAVVFCVSLSDYDQMSIGTENSGSGTQLQNKMMQCKELFETMVRHPCFKETPFVLILNKYDVFEEKVNRVPLSSCEWFNDFSPVRPHHNNQSLAHQAYYYIAMKFKDLYASLTSQKLFVAQARARDRVTIDEAFKYIKEVLKWDDEKEETYYGGVEDSFYSTDISSSPFIRQE* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0872 863 PRINTS Alpha G protein (transducin) signature 449 464 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g0872 863 PRINTS Alpha G protein (transducin) signature 617 639 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g0872 863 PRINTS Alpha G protein (transducin) signature 690 718 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g0872 863 PRINTS Alpha G protein (transducin) signature 743 752 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g0872 863 FunFam Extra-large guanine nucleotide-binding protein 3 642 840 - -
Vvi2g0872 863 CDD G-alpha 448 834 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g0872 863 SMART galpha_1 436 820 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g0872 863 Pfam G-protein alpha subunit 444 830 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g0872 863 SUPERFAMILY FYVE/PHD zinc finger 186 235 IPR011011 -
Vvi2g0872 863 Gene3D - 477 628 IPR011025 GO:0007165
Vvi2g0872 863 FunFam Extra-large guanine nucleotide-binding protein 3 477 628 - -
Vvi2g0872 863 ProSiteProfiles G-alpha domain profile. 446 842 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g0872 863 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 223 834 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g0872 863 Gene3D - 644 839 IPR027417 -
Vvi2g0872 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 834 IPR027417 -
Vvi2g0872 863 SUPERFAMILY Transducin (alpha subunit), insertion domain 475 627 IPR011025 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0872 Vvi-Chr2 10191824 10201073 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0872 - - vvi:100248864 1694.09