Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0857 ATGCTGTCGCCTGGTGCAGTAGAAATAGGGAGGGATCTGATGGAAAATGAGAAGGAAAACAAGGTTTATGTTCACTACACCCACACTCACCCCACCAAATTCTCTAGGTGGACTGCGAGGGAAAGTCACCAATTTATGTATAAAAGGCCCTGGCAACAAGTTCTTGATTTTTACTCAAATGTGGTGACCGGGCGCTGCTCATTGTTGGGATTGCTTGGAATTGAGACGCATCCTATTCATGATGGTGAAATTGTAGAGGCTTCTGATAAAACTGAATTTGGTAATGTTCTGACTAAAGATAGGGGTGGAAGGTGGGCAAGATTGACATTTAAGATTGTTCTTTCGTATCATGGCGCCTCTTTTGATGGGTGGCAGAAGCAGCCTGGCTTGAACACTGTTCAAGGCTTAGTAGAAGCATCACTTGGGAGATTTGTTGATGAGAGAAAGGCACAACAGCTGAAAGAGAAGAATTTACCTGTAGAAGGCATGGTTACTGTTGCAGGACGCACAGACAAGGGAGTGACAGCTCTTCAACAAGTCTGCTCTTTCTATACTTGGAAGAAGGATGTTAAAGTTCAAGATATTGAAGATGCCATCAATGGTGCAGCACCAGGAAAGCTCAGGGTTATATCTGTTTCTGAGGTATCACGTATATTCCATCCTAATTTCTCTGCCAAGTGGAGGCATTATTTTTATATTTTCCCTTTGAATGATGGGGATGATGGGGAGCAAATTAGTGAGAATGAGATGGATATTCAGAAAATCAGTTTTAATGAAAAGTATGGTGAGCAGGGAAGTGAATGTCCTGCTCAATACAATGGTGGGGAGAATACGGAGAACTTAATATTTGATGATGATGGTGAGTTTGAAAGCAGAAAGAAACCAAGTACGTTCAGCATAAGCAGAGTCGACCAACTTTTGCGACAATTAGAAGGAAAGTTATTATCCTACAAAATATTTGCACGGGATACAAAAGCTTCAAGAAACATAGGTCCACCAACAGAATGTTTTGTCTTCCATGCTCGAGCCACAGAAGCCAGATTACAATTTTCTGATGATGGAGAAGGAACAAAAGTTATGTGTATTGAGCTGGTTGCTAATCGCTTCTTACGCAAGATGGTTCGGGTGCTTGTGGCAACATCAATAAGGGAAGCAGCTGCAGGTGCAGAGCAGGATGCATTGCTTAAGCTGATGGATGCTACATGCAGGCGAGCCACGGCTCCTCCAGCACCCCCTGATGGCCTTTGTCTCATTGACGTTGGATTTACTGAATTTGATCCACAAATTTGCTTCATCCGATAA 1302 0.4286 MLSPGAVEIGRDLMENEKENKVYVHYTHTHPTKFSRWTARESHQFMYKRPWQQVLDFYSNVVTGRCSLLGLLGIETHPIHDGEIVEASDKTEFGNVLTKDRGGRWARLTFKIVLSYHGASFDGWQKQPGLNTVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTALQQVCSFYTWKKDVKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDGDDGEQISENEMDIQKISFNEKYGEQGSECPAQYNGGENTENLIFDDDGEFESRKKPSTFSISRVDQLLRQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQFSDDGEGTKVMCIELVANRFLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGFTEFDPQICFIR* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0857 433 PANTHER PSEUDOURIDYLATE SYNTHASE 101 423 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi2g0857 433 SUPERFAMILY Pseudouridine synthase 109 427 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi2g0857 433 Gene3D - 279 420 IPR020095 GO:0003723|GO:0009982
Vvi2g0857 433 Pfam tRNA pseudouridine synthase 345 422 IPR020097 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi2g0857 433 FunFam tRNA pseudouridine synthase 106 225 - -
Vvi2g0857 433 Gene3D - 108 225 IPR020094 GO:0003723|GO:0009982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0857 - - vvi:100242086 870.537