Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0841 ATGGGTTCAAGATTCTTCAACCCAAATAACCCTTCTGGGTCAGTAAACTCTGGTGAACACATTGAATTGAATAGTAGCTCCTGTACTTATGATCTTGATAGTGAAGCTGGGAGTCGTGAGTATGCAACCTACACAGTCCATTTACCCCCTACACCAGACAACAGACCCTCTGGACTGGATATCCAGTTGGATGGAAGGGTCTCACAGAGAGTTGAGGAGCACTATACAGCCAATTCTATATTTACTGGTGGGCATAATAGTGTTACTCGGGCCCATCTGATGGACAAGGTGGCCGAGTCCGAAGCGAGCCACCCCCAGATGGCGGGTTCTAAGGGGTCTACCTGTGCCATTCCAGGGTGTGATGCCAAGATCATGACTGATGAGAGGGGAGAAGATATTCTCCCTTGTGAATGTGATTTCAAGATTTGTAGGGATTGTTATGTTGATGCAGTTAGGACTGGTGATGGGATTTGCCCTGGTTGTAAAGAGCCTTACAAGGGTGAATTTGCAGCGGTTGATAATGGCCGGGTTTTGACCTTGTCATCGACTGTTGGGGTGTTCAAGGAGGAAAGGAGGCTGTCTTTGTTGAAATCTTCATCACCAAGGTCGACATTGATGAAGAGCCAGACGGCAGAATTTGATCATAATGGATGGTTGTTTGAAACAAAAGGCACTTATGGATATGGAAATGCTATATGGCCAGAGGAGGGTGGAAATGCGAATGGAGAAAATGAAAATGCAGGTGAATCCATTAAGCTTCTCAGCAAACCATGGAGGCCCCTGACTCGCAAGCTGTCTATAAGAGCTGCAGTCCTCAGCCCATATCGGCTTCTAGTCTTAGTCCGAATGGCTTTTCTTGGATTATTTCTGACATGGAGGATTAGAAACCCTAATGAGGATGCAATGTGGCTATGGGGTATGTCTGTGGTGTGTGAGATCTGGTTCGCCTTTTCTTGGTTACTCGATCAGCTTCCTAAGCTCTGCCCTATTAATCGTTCTGCTGACCTCAATGTCTTAAAAGAGAAATTTGAAACACCTAATCCCAGAAACCCCACAGGAAAATCTGATCTTCCTGGAATAGATATGTTTGTATCAACTGCAGATCCAGAGAAAGAACCCCCTCTTGTCACTGCAAACACCATTTTGTCTATCCTGGCAGCTGATTATCCAGTTGAGAAGCTCTCCTGTTATGTTTCTGATGATGGAGGTGCCCTTCTGACCTTTGAGGCCATGGCTGAAGCTGCAAGTTTTGCCAATTTGTGGGTCCCATTTTGCCGAAAGCATGATATTGAGCCAAGGAACCCGGAATCTTATTTCACTCTGAAGAGAGATCCTTATAAGAACAAGGTACGCCCAGATTTTGTCAGAGAACGTAGACGAGTAAAGAGAGAGTATGATGAGTATAAGGTTCGCATTAATGGCCTTCCCGATTCAATCCGACGTCGTTCTGATGCCTATAATGCTCGGGAGGAGATAAAAGCTTTGAAGCTTCAGAGACAGAATAAAAATGATGATGAGACACTGGAAAATGTGAAGGTTCCAAAGGCTACCTGGATGGCTGATGGAACTCATTGGCCGGGAACTTGGGTGGTTCCTGGACCTGAGCACTCTAAGGGTGATCATGCTGGAATCATACAGGTGATGTTGAAGCCTCCCAGTGATGAACCACTAAATGGCAGTTCCATTGATGCAAACCCCATTGATCTAACTGAAGTTGACATTCGTCTCCCCATGCTGGTTTATGTTTCCCGTGAAAAGCGCCCTGGTTATGACCACAACAAGAAGGCTGGTGCCATGAATGCCCTGGTTCGAGCCTCGGCCATCATGTCCAATGGCCCTTTCATTCTAAACCTTGACTGCGACCACTACATCTACTACTCTGAAGCATTGAGAGAAGGCATGTGCTACATGATGGATCGTGGTGGTGACCGCCTTTGTTATGTCCAGTTTCCCCAGAGGTTTGAAGGAATTGACCCTTCTGATCGCTATGCAAACCGCAACACAGTTTTCTTCGATGTCAACATGCGGGCCCTTGATGGACTTCAAGGTCCCATGTATGTTGGAACTGGATGCCTCTTCAGGAGGACTGCCCTTTATGGTTTTGATCCACCTCGGTCAAAGGAACACCCTGGTTGCTGGAGCTGCTGCTTTGGCCGTGGCAAGAAGAAGCCTGCAAGTGTTGCCAATGCCCCTGAAGAGGAAGATGAGTCACATGGATTGCGAGAAACTGATGATGAAATGAACTCAAGTCTTCTTCCAAAGAGTTTTGGAAATTCAAGTTTCCTGATTGATTCAATCCCAGTGGCAGAGTTCCAAGGCAGGCCTCTGGCTGATCACCCCTCTGTGAAGAATGGACGACAACCTGGTGCTCTCACCATTTCTAGGGAGCCGCTTGGTGCGGCTACAGTGGCAGAGGCAATCAGTGTCATCTCATGTTGGTACGAGGATAAAACCGAATGGGGCCAGCGAGTTGGGTGGATTTACGGGTCAGTGACAGAAGATGTAGTAACAGGGTATAGGATGCACAACCGTGGATGGAGATCCATCTATTGTGTGACCAAGCGGGATGCCTTCCGTGGGACTGCCCCGATCAATCTCACTGATAGGCTACACCAGGTGCTCAGGTGGGCTACTGGCTCGGTCGAGATATTTTTCTCTCGTAATAATGCTCTTCTGGCCAGCCATAGGATGAAGTTTCTGCAGAAGATTGCTTACATGAATGTTGGAATTTATCCCTTCACTTCCATTTTCCTCGTTGTGTACTGCTTCCTCCCTGCACTTTCCCTCTTCTCGGGCGAGTTCATTGTTCAATCCCTCAGTGTGGCCTTCCTCACATACCTTCTGGGCATCACCATAACCCTCTGTCTGCTTGCTGTGCTGGAGATCAAGTGGTCCGGCATTACATTGGAGGAATGGTGGCGAAATGAGCAGTTCTGGTTGATTGGAGGCACTAGTGCCCATCTTGCTGCTGTGATCCAGGGCTTACTAAAGGTGGTGGCAGGCATTGAGATCTCCTTCACTTTGACGTCAAAATCAGCCGGTGATGATGCAGACGAAGACTTCGCTGATCTCCATCTTATCAAATGGACATCCCTGATGATACCACCAGTCACAATCATCATAACCAACTTGATTGGCATAGCTGTTGGGGTCGTCAGAACAATATACAGCGAACTCCCACAGTGGAGCCGTTTGTTAGGAGGCGTGTTCTTCAGCTTCTGGGTGTTGGTTCATCTCTACCCTTTTGCCAAAGGACTAATGGGAAGACGGGGGAGGACACCGACAATTGTGTTTGTTTGGGCGGGACTCATTGCAATCACCATTTCCCTCCTCTGGGTGGCTTGA 3345 0.4768 MGSRFFNPNNPSGSVNSGEHIELNSSSCTYDLDSEAGSREYATYTVHLPPTPDNRPSGLDIQLDGRVSQRVEEHYTANSIFTGGHNSVTRAHLMDKVAESEASHPQMAGSKGSTCAIPGCDAKIMTDERGEDILPCECDFKICRDCYVDAVRTGDGICPGCKEPYKGEFAAVDNGRVLTLSSTVGVFKEERRLSLLKSSSPRSTLMKSQTAEFDHNGWLFETKGTYGYGNAIWPEEGGNANGENENAGESIKLLSKPWRPLTRKLSIRAAVLSPYRLLVLVRMAFLGLFLTWRIRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLCPINRSADLNVLKEKFETPNPRNPTGKSDLPGIDMFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANLWVPFCRKHDIEPRNPESYFTLKRDPYKNKVRPDFVRERRRVKREYDEYKVRINGLPDSIRRRSDAYNAREEIKALKLQRQNKNDDETLENVKVPKATWMADGTHWPGTWVVPGPEHSKGDHAGIIQVMLKPPSDEPLNGSSIDANPIDLTEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYYSEALREGMCYMMDRGGDRLCYVQFPQRFEGIDPSDRYANRNTVFFDVNMRALDGLQGPMYVGTGCLFRRTALYGFDPPRSKEHPGCWSCCFGRGKKKPASVANAPEEEDESHGLRETDDEMNSSLLPKSFGNSSFLIDSIPVAEFQGRPLADHPSVKNGRQPGALTISREPLGAATVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWRSIYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASHRMKFLQKIAYMNVGIYPFTSIFLVVYCFLPALSLFSGEFIVQSLSVAFLTYLLGITITLCLLAVLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVIQGLLKVVAGIEISFTLTSKSAGDDADEDFADLHLIKWTSLMIPPVTIIITNLIGIAVGVVRTIYSELPQWSRLLGGVFFSFWVLVHLYPFAKGLMGRRGRTPTIVFVWAGLIAITISLLWVA* 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0841 1114 SUPERFAMILY RING/U-box 100 167 - -
Vvi2g0841 1114 MobiDBLite consensus disorder prediction 1 20 - -
Vvi2g0841 1114 MobiDBLite consensus disorder prediction 726 748 - -
Vvi2g0841 1114 Pfam RING/Ubox like zinc-binding domain 117 166 - -
Vvi2g0841 1114 MobiDBLite consensus disorder prediction 721 749 - -
Vvi2g0841 1114 Pfam Cellulose synthase 360 1113 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi2g0841 1114 FunFam cellulose synthase-like protein D3 566 703 - -
Vvi2g0841 1114 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 567 703 IPR029044 -
Vvi2g0841 1114 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 259 1100 - -
Vvi2g0841 1114 Coils Coil 485 505 - -
Vvi2g0841 1114 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 177 IPR013083 -
Vvi2g0841 1114 FunFam Cellulose synthase-like protein D3 98 176 - -
Vvi2g0841 1114 SUPERFAMILY Nucleotide-diphospho-sugar transferases 375 703 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0841 Vvi-Chr2 9012738 9017048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0841 31 1114 Glycosyltransferase AT3G03050 77.239 0.0 1772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0841 K20924 - vvi:100247219 2256.87