Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0811 ATGCCGATAACAACTGTCAAAGTCAGCAATGTTTCCTTAGGGGCAACTGAGCAGGACATCAAAGAATTCTTTTCTTTTTCTGGTGACATTGAATGTGTTGAAATGCAAAGTGATAATGAGAGGTCTCAAATTGCATATGTTACCTTCAAGGATATGCAAGGAGCAGAGACTGCTATTCTTCTTTCGGGAGCAACAATTGTGGATATGTCTGTGACCATAACTCCTGCTCCAGACTACCAGCTCCCGCCTGCTGCTGCTTCAGCACCACCTCTTCCAAAGGAAAATAAAACTCCAGGTCGTGCTGAATCTGCTTTTCGAAAGACAGAAGATGTTGTCAGTGGAATGCTTGCTAAAGGCTATATCTTAGGCAAAGATGCAGTTAATAAAGCAAAATCCTTTGACGAGAAACATCAATTGACTTCCACAGCCACGTCTAAAGTTGTTTCCTTTGACAAAAAAATCGGTTTCACTGAGAAGATAAGTGCTGGTACTTCTGTTGTGAATGAAAAAGTTCGAGAAGTGGATCACAAATTTCAAGTTTCCGATAAAACCAAGTCAGCATTTGCGGCTGCTGAGCAAAAAGTCAGTAGTGCTGGATCTGCCATAATGAAAAACCGATATGTATTTACCGGAGCTTCATGGGTAACAGGCGCTTTCAATAAGGTTGCTAAGGCAGCTGAGGAAGTGGGCCAGAAGGCAAAAGAGAAGGTGGGAAAGTCTGAAGATGAACAGAAAAGAAGAGTAGTGGAGGACTTTGCCCAGGTTCATCTATCTGATTCTCCAAAAGCTTCTGCTTCCAATGAGCAGCATCCTTACAAGCCTGCTCCTCCACAAGGTTTGATTCTCTAA 849 0.4264 MPITTVKVSNVSLGATEQDIKEFFSFSGDIECVEMQSDNERSQIAYVTFKDMQGAETAILLSGATIVDMSVTITPAPDYQLPPAAASAPPLPKENKTPGRAESAFRKTEDVVSGMLAKGYILGKDAVNKAKSFDEKHQLTSTATSKVVSFDKKIGFTEKISAGTSVVNEKVREVDHKFQVSDKTKSAFAAAEQKVSSAGSAIMKNRYVFTGASWVTGAFNKVAKAAEEVGQKAKEKVGKSEDEQKRRVVEDFAQVHLSDSPKASASNEQHPYKPAPPQGLIL* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0811 282 Gene3D - 2 74 IPR012677 -
Vvi2g0811 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 66 IPR000504 GO:0003723
Vvi2g0811 282 SMART rrm1_1 5 74 IPR000504 GO:0003723
Vvi2g0811 282 MobiDBLite consensus disorder prediction 232 253 - -
Vvi2g0811 282 FunFam RNA recognition motif-containing protein 1 74 - -
Vvi2g0811 282 SUPERFAMILY RNA-binding domain, RBD 3 83 IPR035979 GO:0003676
Vvi2g0811 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Vvi2g0811 282 MobiDBLite consensus disorder prediction 232 282 - -
Vvi2g0811 282 MobiDBLite consensus disorder prediction 82 103 - -
Vvi2g0811 282 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 4 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0811 Vvi-Chr2 8319729 8329958 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0811 - - vvi:100262521 541.576