Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0800 ATGTGCTCAATTGCAAGATTCTGCTTGGTGGAACCGGTTTTGTTGCAAATTCGAGTTGTTTCCAATCTAAAATGTCTCTTTAGAGTGTACCGTACGGCTTCTTCGGCGTTGTTGTTGGATGACGACCATGTGTTTGATACTAGTCCTGGTGTCCCAGTTGATGATCTTGTTGAAATTAATATTCAGAAATGTCAGCTGCGTGTTGGTAGAAAGCGCAATGAAATTAGGGTTATGAAGCGTCGGTCTCGGATCCATAGAAAGCATGTATTATCTCCTGTGGTAGTTAAAGTGTTTAAATCTTTGAATTGGGAAGTGGCCAGGCATATAAAGTTTTCAACAACAATGAAGAAGTATGGGTTTTCTCGTTCCATTGATGCATTCAGGACAGTTGTTAATGTGTTAGCTTTGGCGGGGATGCACATGGAGGTGTATGCTTTGCTTCGAGATATTGTTTGCTATTATAACAAAGTTAATTTGGATGCTTTTGAGTTGTTCCCCATTTTGTTGGAGTCGCCTAAAGATGCAGCAAGATCAGTTATTGTATTTGATTTACTTATTAAGGTTTTTGCAGCAAATTCAATGCTTGAAAATGCTGTGGACGTATTTTTGCAAGCTAAGAAAACTGGGCTGGAATTGAGTACTCGCTCCTGCAATTTCTTGCTCAAGTGTCTGGCTGAAGCAAATAGAAGGGAATTTCTCAGGAGTTTGTTTGAAGAAATGAAGAGCACCGGGCCACCACCTAATGTTTTCACTTACACCATTATGATGAACTTTTACTGTAAAGGAAATTTTGGGGAGGCAGACATTGATACTCGACAAGCAACTGAGATTCTAGAGGAAATGGAGAGAAATGGGGAAAGCCCAACTGTTGTAACATATAGTACTTATATTTATGGACTTTGTAGGGTTGGTTATGTTGAGTCTGCATTGGATTTTGTTCGGAGCTTGATATCTGCAAATGGGCTTGTCAATGTTTATTGTTATAATGCTATTATTCATGGGCTTTGCAAAAAAGGTGAACTAGATGAAGCTTTGAAGGTGTTGGAAGAAATGAAGAGTTGTGGAATATCACCAGATGTTTATACTTACAGCATCTTGATTCATGGATTTTGCAAACAGGGAGATGTTGAGAAAGGTCTTTATTTAATTGAGGAAATGAAATACAGTAACATGGAACCTTCACTGGTTAGCTATAGCTCACTCTTTCATGGTCTCTGTAAGAAGAGGCTCTCGGATATTTCACTAGATATATTCCGTGATCTTGGGGCTGCTGGATACAAGTATGACCAAACTGCTTATAGCATCTTAATCAAAGGATTTTGTATGCAGGGGGATTTGGATTCTGCCCACAAACTTATGGAGGAGATGGTCAGAAATAATTTGGCTCCTGATCCTTCTAATTTTGAGAGTCTGGTTCATGGCTTTTGCAAGATGGGGCTCTGGGTTAATGCCTTGGAATTTTTCAATATGATGCTAGAAGGTGGAATTCTGCCTAGTATTGCAACTTGCAATGTTATTATTGATGCGCATTGCAGGGAAGGCCGTGTGGAAGAAGCTTTGAACCTTATGAATGAAATGCAAACACAAGGGATTTTCCCCAACTTGTTTACTTATAATGCTGTCATCAACAGGTTGTGCAAGGAAAGAAAGTCAGAAAGAGCATTAGAACTTTTTCCTTTAATGCTAAAGAGGAATGTTCTTCCTAGCGTTGTTGTTTATAGCACCCTTATAGATGGTTTTGCTAAACAGTCAAACTCACAGAAGGCCTTGATGTTATACGCAAGAATGTTAAAGATTGGAGTTACACCAGACATGGTTGCCTATACAATTCTTATCAACATATTATGCCACAGGAGCAGAATGTGTGAAGCATATAATCTGTTTAAGAAAATGACTGAAAACGGTATGACTCCAGATAAGATTTCTTACACATCAGTTATAGCTGGGTTTTGTAGAATCGGGGACATGAGGAAGGCATGGGCATTGTTCAATGAAATGTTACAGAGAGGTCATTTGCCTACTGTTGTTACTTATACCTCTCTAGTTGATGGATATTGCAAGATGAATCGCATTGATATTGCTGATATGTTAATCGATGAAATGAAAAGAAAGGGGATCACTCCTGATGTGGTGACTTATAATGTTCTCATTGCAGCACACAGGAGACGTGGAAATCTTGATAAAGCACTTGAAATGCTTAATGAAATGAAGGAGAATGGTGTTCTCCCAGATCATATGACCTACATGATGCTGGAGTGGCTACTGAAGGCTAAGAAGCTGAAAACAAGACGTAGCAAAGACTAG 2304 0.3911 MCSIARFCLVEPVLLQIRVVSNLKCLFRVYRTASSALLLDDDHVFDTSPGVPVDDLVEINIQKCQLRVGRKRNEIRVMKRRSRIHRKHVLSPVVVKVFKSLNWEVARHIKFSTTMKKYGFSRSIDAFRTVVNVLALAGMHMEVYALLRDIVCYYNKVNLDAFELFPILLESPKDAARSVIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTYMMLEWLLKAKKLKTRRSKD* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0800 767 NCBIfam pentatricopeptide repeat 571 604 IPR002885 -
Vvi2g0800 767 NCBIfam pentatricopeptide repeat 469 499 IPR002885 -
Vvi2g0800 767 NCBIfam pentatricopeptide repeat 676 710 IPR002885 -
Vvi2g0800 767 NCBIfam pentatricopeptide repeat 711 744 IPR002885 -
Vvi2g0800 767 NCBIfam pentatricopeptide repeat 502 534 IPR002885 -
Vvi2g0800 767 NCBIfam pentatricopeptide repeat 291 319 IPR002885 -
Vvi2g0800 767 NCBIfam pentatricopeptide repeat 606 639 IPR002885 -
Vvi2g0800 767 NCBIfam pentatricopeptide repeat 326 360 IPR002885 -
Vvi2g0800 767 NCBIfam pentatricopeptide repeat 432 464 IPR002885 -
Vvi2g0800 767 NCBIfam pentatricopeptide repeat 536 569 IPR002885 -
Vvi2g0800 767 NCBIfam pentatricopeptide repeat 641 674 IPR002885 -
Vvi2g0800 767 NCBIfam pentatricopeptide repeat 361 394 IPR002885 -
Vvi2g0800 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 288 IPR002885 -
Vvi2g0800 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 709 743 IPR002885 -
Vvi2g0800 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Vvi2g0800 767 Pfam PPR repeat 495 527 IPR002885 -
Vvi2g0800 767 Pfam PPR repeat 285 314 IPR002885 -
Vvi2g0800 767 Pfam PPR repeat 600 632 IPR002885 -
Vvi2g0800 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Vvi2g0800 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Vvi2g0800 767 SUPERFAMILY HCP-like 324 670 - -
Vvi2g0800 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Vvi2g0800 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 674 708 IPR002885 -
Vvi2g0800 767 Gene3D Tetratricopeptide repeat domain 386 459 IPR011990 GO:0005515
Vvi2g0800 767 Gene3D Tetratricopeptide repeat domain 321 385 IPR011990 GO:0005515
Vvi2g0800 767 Gene3D Tetratricopeptide repeat domain 582 766 IPR011990 GO:0005515
Vvi2g0800 767 Gene3D Tetratricopeptide repeat domain 179 320 IPR011990 GO:0005515
Vvi2g0800 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Vvi2g0800 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Vvi2g0800 767 Gene3D Tetratricopeptide repeat domain 482 581 IPR011990 GO:0005515
Vvi2g0800 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Vvi2g0800 767 PANTHER ATPASE EXPRESSION PROTEIN 3 324 597 - -
Vvi2g0800 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Vvi2g0800 767 Pfam PPR repeat 396 421 IPR002885 -
Vvi2g0800 767 Pfam Pentatricopeptide repeat domain 697 749 IPR002885 -
Vvi2g0800 767 Pfam PPR repeat family 324 372 IPR002885 -
Vvi2g0800 767 Pfam PPR repeat family 533 582 IPR002885 -
Vvi2g0800 767 Pfam PPR repeat family 215 261 IPR002885 -
Vvi2g0800 767 Pfam PPR repeat family 638 687 IPR002885 -
Vvi2g0800 767 Pfam PPR repeat family 430 477 IPR002885 -
Vvi2g0800 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Vvi2g0800 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 673 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0800 231 764 Glycosyltransferase AT1G05670 29.554 3.05e-77 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0800 - - vvi:100852839 1532.69