Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0789 ATGGGGAAGAAGAAGCCCAAAGATCCCGAAAGCGGCGACGTTTTCAAAACCCTTTTCGGATATCTTCCCAAAGATGATGCTTCCTCACGTTCTCTCTTTTCCGACAGCAATCCCTTCCGTAGAAAGCCCAGTCTTTCTTCCCAAACACTTCCTTTTGAAAACCCTAGCATTCCCGATTCTGAGGTCAAGAAGCGGAAGAGGACCGAAGAAACTGACGAAACTTCTCAAACTCTTGAAGATGCTCCAAAAGCTCAGCATTTGGTCGAGCCCAAGAAATCTAAGAACGACAAACTACGAAACCCTAATTTGGGTTCTGAATCGAATGAAGAACTTCTTAATTCGGTTTCTGAGTCGAACAAAACGTTGAAGAAAAACAAGGGAAAATATATCATTTTGGGTTCTGAGGGAAACCCTAATTCGGGATCTGAAGTGAAGGAAATGGTGGATTCAGAAAAGGGGAAGGAGAAGAAGAAGAAGAAGAGGAAGAGGGATGAGATTGAGGAGGAGTATGAGGCACAACACTATGGGACGGTGGCCAAAGTGGAGGGTGTTGGGGAGAAGAGGAAGAGCGTGGTTAATCCTGCTGAAATGTTGGTCTCGAAGGAGGGGTTTGATGATGAAAGCAAGCTTTTGAGGACTGTCTTTGTGGGGAATTTGCCATTGAAGATCAAGAAGAAGGCTTTGTTGAAGGAATTTAGCGTGTTCGGGGAGGTTCAGTCTGTGAGGATTCGCTCTGTTCCCATCTTGGATAGCAAAAAACCAAGAAAGGGTGCGATAATCTCGAAAAAAATCAATGATTCTGTTGACAGTGTCCATGCTTATATTGTTTTCAAGACTGAGGAATCAGCACAGACTTCTTTGTCTCATAATATGTCTGTGATTGGAGGAAATCACATCCGTGTTGATAGGGCATGTCCACCTCGCAAAAAATTGAAAGGAGAGAATGATGCTTCACTTTATGATAATAAGAGGACTGTTTTTGTGGGAAACCTCCCTTTTGATGTGAAGGCTGAAGAAATTTATCAGTTGTTTTGCGGTATAGATAGCCTGGAGTCCAGTATTGAAGCTGTTCGGGTTGTTAGAAATCCTCATACAAGTGTAGGAAAGGGTATTGCCTATATTCTGTTTAAAACAAAGGATGCTGCAAACTTGGTTGTTAAGAAGCGAAACTTGAAGCTGCGGGATCGGGATCTGAGGCTCTATCATGCCAAGCCTAGTTCCACCACACCATCTAAGAGAAGAAATCCAACACCTGCAGAGGCAGATATTTCCCCAGCCAAGAAGTTGGCGTCTGGTTCAAGGATTTCCTTGGAAAGCAGCAATAGATTGAAGACAAAGTCTGTCATCTCCTACCAGGGCTTGCAAGCAAGCAAATCTGGTGTCCCAAAGAAAGGCCGTCTGCAAACCAAGGAAGCGGTGAAGTTCAAATCCAAAAACCAGAAGGAGAATACACTGAAAGAACAACAAAAGAAAAGACCAGCAGTTGCTGCCAGAAAGGCAAAGATCAATGCAGTAAACGCTGCTGGTGGTGGTGGTGGTTCAAAACAAACAGGGAAAAAACGGAAGCTGGAAAGCCAGACCCCAGAGGGTGGGCGGCGGAGCAAGAAAGCCAAGAAATTTCGGTAG 1626 0.444 MGKKKPKDPESGDVFKTLFGYLPKDDASSRSLFSDSNPFRRKPSLSSQTLPFENPSIPDSEVKKRKRTEETDETSQTLEDAPKAQHLVEPKKSKNDKLRNPNLGSESNEELLNSVSESNKTLKKNKGKYIILGSEGNPNSGSEVKEMVDSEKGKEKKKKKRKRDEIEEEYEAQHYGTVAKVEGVGEKRKSVVNPAEMLVSKEGFDDESKLLRTVFVGNLPLKIKKKALLKEFSVFGEVQSVRIRSVPILDSKKPRKGAIISKKINDSVDSVHAYIVFKTEESAQTSLSHNMSVIGGNHIRVDRACPPRKKLKGENDASLYDNKRTVFVGNLPFDVKAEEIYQLFCGIDSLESSIEAVRVVRNPHTSVGKGIAYILFKTKDAANLVVKKRNLKLRDRDLRLYHAKPSSTTPSKRRNPTPAEADISPAKKLASGSRISLESSNRLKTKSVISYQGLQASKSGVPKKGRLQTKEAVKFKSKNQKENTLKEQQKKRPAVAARKAKINAVNAAGGGGGSKQTGKKRKLESQTPEGGRRSKKAKKFR* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0789 541 MobiDBLite consensus disorder prediction 29 55 - -
Vvi2g0789 541 MobiDBLite consensus disorder prediction 145 168 - -
Vvi2g0789 541 CDD RRM1_RBM34 212 302 - -
Vvi2g0789 541 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 405 IPR000504 GO:0003723
Vvi2g0789 541 CDD RRM2_RBM34 325 399 IPR034221 -
Vvi2g0789 541 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 307 526 - -
Vvi2g0789 541 MobiDBLite consensus disorder prediction 474 494 - -
Vvi2g0789 541 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 250 IPR000504 GO:0003723
Vvi2g0789 541 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 397 IPR000504 GO:0003723
Vvi2g0789 541 MobiDBLite consensus disorder prediction 131 168 - -
Vvi2g0789 541 MobiDBLite consensus disorder prediction 474 541 - -
Vvi2g0789 541 MobiDBLite consensus disorder prediction 58 99 - -
Vvi2g0789 541 SUPERFAMILY RNA-binding domain, RBD 318 414 IPR035979 GO:0003676
Vvi2g0789 541 Gene3D - 314 424 IPR012677 -
Vvi2g0789 541 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 306 IPR000504 GO:0003723
Vvi2g0789 541 MobiDBLite consensus disorder prediction 397 438 - -
Vvi2g0789 541 MobiDBLite consensus disorder prediction 24 119 - -
Vvi2g0789 541 SUPERFAMILY RNA-binding domain, RBD 205 312 IPR035979 GO:0003676
Vvi2g0789 541 Gene3D - 134 313 IPR012677 -
Vvi2g0789 541 MobiDBLite consensus disorder prediction 517 533 - -
Vvi2g0789 541 SMART rrm1_1 325 401 IPR000504 GO:0003723
Vvi2g0789 541 SMART rrm1_1 213 302 IPR000504 GO:0003723
Vvi2g0789 541 MobiDBLite consensus disorder prediction 100 119 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0789 K14837 - vvi:100266124 956.436