Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0788 ATGGCTCAGCTATGCTATTTCATAACTGTTGTGTCTCTTCTGCTCTTTCTTCAATCTGATTCCTATGCAGAAGCTGGAACCATTGGAGTCAACTATGGAAGGCTAGGGGACAACCTCCCACCTTCAACCCAGGTTGTGGCGCTGTTGAAATCCAGAAACATAAACCGACTTCGTCTTTTTGATCCGAACCTAGATGCCCTTGAGGCTCTTCAAGGCTCTGGGATTGAAGTTGTCCTTGGAACACTAAACCAGGACCTCCCACAACTCGCCGCCGACCTCTCCTTTGCCAGAAGCTGGGTCAGTACCAATGTGATTCCATACTCTCAAACTGTCCGGTTCAGGTACATATCAGCTGGAAACGAAGTCATCCCTGGGAACTTAGCAGCTTATGTGTTTCCAGCCATGCAGAATCTCGATCAGGCCTTGAGAGATGCCCAACTCCCATACAGTATTCCCGTAAGTACCAGCGTTTCCACGGCAGTTCTTGGAACTTCATACCCTCCTTCACAAGGGGAATTCTCCATGGACATAGACCCTATAATGAGATCCATAACAAAATTCTTAGCAGCAAATGGAAGCCCTTTTCTCGTCAATGTGTACCCCTACTTTTCATACATAAATGACCCAGTAAACGTCCCATTGGACTACGCCCTATTCAATAGTAGCCGGGTGGTTGTGAGGGATGGGGAGCTTGAATACAAGAACCTGTTTGACGCTATCACTGATGCCACCTACACAGCCCTGGAGAAGGCCGGAGGGGCCTCTGTGAAGGTGGTGGTGACGGAGAGTGGGTGGCCTTCCAATGAAAATGGTCAGATTGCAACCATTGAAAACGCAAGGATGTATAACAACAACCTGGTAGCACACTTATCAGGAGCAAAAGGGACACCGAAGAAGCCAGGGGAGAGCATAGAGGCTTATGTGTTTGCCATTTTCAATGAGGATCTCAAACCCAGGGGAACAGAGCAGAACTTTGGCTTGTACTACCCTAATATGACAGAGGTCTATCATGTTGAGTTCATTAATTAG 1029 0.4762 MAQLCYFITVVSLLLFLQSDSYAEAGTIGVNYGRLGDNLPPSTQVVALLKSRNINRLRLFDPNLDALEALQGSGIEVVLGTLNQDLPQLAADLSFARSWVSTNVIPYSQTVRFRYISAGNEVIPGNLAAYVFPAMQNLDQALRDAQLPYSIPVSTSVSTAVLGTSYPPSQGEFSMDIDPIMRSITKFLAANGSPFLVNVYPYFSYINDPVNVPLDYALFNSSRVVVRDGELEYKNLFDAITDATYTALEKAGGASVKVVVTESGWPSNENGQIATIENARMYNNNLVAHLSGAKGTPKKPGESIEAYVFAIFNEDLKPRGTEQNFGLYYPNMTEVYHVEFIN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0788 342 Gene3D Glycosidases 27 342 - -
Vvi2g0788 342 SUPERFAMILY (Trans)glycosidases 28 338 IPR017853 -
Vvi2g0788 342 Pfam Glycosyl hydrolases family 17 28 340 IPR000490 GO:0004553|GO:0005975
Vvi2g0788 342 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 15 337 IPR044965 GO:0004553|GO:0005975
Vvi2g0788 342 FunFam glucan endo-1,3-beta-glucosidase, basic 28 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0788 Vvi-Chr2 7878002 7879125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0788 25 340 Glycoside Hydrolase AT3G57270 48.903 2.82e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0788 - - vvi:100260920 679.093