Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0765 ATGCCTTGTCATAGTTTTTATGAAGGGTTCTGCGTTCTTTGCACTCTCCGAGATCATATTGAGCTTTCCTTGGCTTCTTCAGGACGGGCAATTATGCCTTTGAAACTTGTTGACAATTTGAATAATATTTCATCTAGTTTGCAGAGATACCAGCAGGAAGATGCTCATGAGTTCTTGCAGTGCCTATTAGATAGACTAGATAGTTTTTACTTGATGAATCAGGATAAAGGCTCTCATTCTCCAGATGATAACTTAGTGAAACATGTTTTTGGTGGTTATCTCATCAGCAAGCTTCGATGCTGCAATTGTGGGCATATTTCCGACACATATGAGCCCTTGATAGATCTGAGTTTGGAGATTGAAGATGTTGATACGCTTCCTTGTGCTTTGGAATCATTCACCAAGGTAGAAAAGATTGAAGATCCTGAGATGAAGTTTACATGTGATAACTGTAAGGAAGAAGTGTCAGTAGAGAAGCAGCTTTTACTGGATCAGGTCCCTTTAGTAGCTGCTTTTCATTTGAAGAGATTCAAGACAGATGGCACTTATGTGGAGAAGATTGATAAGCACGTGGAGTTCCCATTAGAATTGGATTTGCTGCCATACACCAAAGAGAGGGAGGACGATAATGTGGAATTGAAGTATGAACTCTATGCGATTGTGGAGCATACTGGATTTTCATCTACTTCCGGGCATTACTTTTCCTACATTCGTTCATCACCGGATACATGGCACAGATTGGATGACTCGAAGGTTACTTCAGTTCCGGAAGATTATGTGCTTCATCAAGAGGCGTACATTTTATTCTATGCAAGGCAGGGTACACCCTGGTTTTCAAGTTTAATGCAAACACAAAAGCCATGCTTAGACCCAAATACCTCAGGCAATTCACCCAAGTCAGTCCTAGATAATGTGGATAGCATCTCTACTTCCCTTCCTACCTTAGCAAATGTTTACAGCCATGAGGCCAGTGAAACTGTAGATGCAGCAGATGAAATATCTACCTGTCTTTCTGGAGGGGGAAGAGGTGATGTAGTTCAGGTCCATGAAGATGGTGATGTACCTCACAGGGTTGATACTCCCATGCCACTTGGGGTTACTAGTTGCTTTGATGGAACTTTAGATCACACTCAGAATATTTCTACCACTTCCCCTTGCAGAGATCATGATGGAAATCAGCATATCAACGAAAACTGCAAGTCCAAAATCCATCCTCAAACTCCACCAAGATCCCCAAGTCCAGATATATATGCTGAAGAGCCTCCAGAAGTGAGTTATAATATTCCCCGTGGTCATTTGAGACAGAAGAACCAAGTGGCTTGTAAAAAACCACTGAACAAGGCATTGGAGGATTCGCGGAAAAGGGAGGCTTGTAAATTATGTAAGAACATGCCTGCGTCAAGGAGTATGAGACTTATGGCAGCCATGAAGGGGTCACAAAGTGAAGGTTCCTTGGGGAAGAAGAAAAGCAAGAGAAGAATGGAATCATCTGCAAATGGAGAGTCCAATACTAGAGCTCGCCGGAAGTCCAACCCATGTCCTGTCATGCCTACTGTGGCAGCTGGAAATTTTCGCTGA 1578 0.4259 MPCHSFYEGFCVLCTLRDHIELSLASSGRAIMPLKLVDNLNNISSSLQRYQQEDAHEFLQCLLDRLDSFYLMNQDKGSHSPDDNLVKHVFGGYLISKLRCCNCGHISDTYEPLIDLSLEIEDVDTLPCALESFTKVEKIEDPEMKFTCDNCKEEVSVEKQLLLDQVPLVAAFHLKRFKTDGTYVEKIDKHVEFPLELDLLPYTKEREDDNVELKYELYAIVEHTGFSSTSGHYFSYIRSSPDTWHRLDDSKVTSVPEDYVLHQEAYILFYARQGTPWFSSLMQTQKPCLDPNTSGNSPKSVLDNVDSISTSLPTLANVYSHEASETVDAADEISTCLSGGGRGDVVQVHEDGDVPHRVDTPMPLGVTSCFDGTLDHTQNISTTSPCRDHDGNQHINENCKSKIHPQTPPRSPSPDIYAEEPPEVSYNIPRGHLRQKNQVACKKPLNKALEDSRKREACKLCKNMPASRSMRLMAAMKGSQSEGSLGKKKSKRRMESSANGESNTRARRKSNPCPVMPTVAAGNFR* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0765 525 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 215 233 IPR018200 GO:0004843|GO:0006511
Vvi2g0765 525 MobiDBLite consensus disorder prediction 398 421 - -
Vvi2g0765 525 SUPERFAMILY Cysteine proteinases 6 272 IPR038765 -
Vvi2g0765 525 MobiDBLite consensus disorder prediction 484 498 - -
Vvi2g0765 525 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 273 IPR028889 -
Vvi2g0765 525 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 273 - -
Vvi2g0765 525 FunFam Ubiquitin carboxyl-terminal hydrolase 20 1 276 - -
Vvi2g0765 525 Pfam Ubiquitin carboxyl-terminal hydrolase 13 270 IPR001394 GO:0004843|GO:0016579
Vvi2g0765 525 MobiDBLite consensus disorder prediction 475 525 - -
Vvi2g0765 525 Gene3D Cysteine proteinases 3 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0765 Vvi-Chr2 7484356 7487411 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0765 10 272 Miscellaneous Gene Families AT4G31670 34.686 3.32e-42 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0765 K11855 - vvi:104882327 1083.55