Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0740 ATGGGTTCCGCTACGCTCTGCACAGGTGTTGATGTCCATTTCAGCATTCCACATCCCTCACACACAACAAAGTACCCGAATTTGTTCTCCAAATCCACCAAATTCTCCTCCAATACATTCACCATTCGTTGCAACTCCTCTTCCAGGTCTCCTCCAAAACCGAAACCGAAACCGAAACCAACTTCATCTGATTCAGAGCAGACCAACCACCAAAACCCTTCTCTGTCTGAACAGCTCAAGCCCCTCTCCAAAACCATCCTCACCAGAGACCATTCTGGCCAAACCCATCTTGTATCCAAGCCTAAGTCCACTTGGATCAACCCCACCAAGCCCAAACCCTCTGTGCTCTCCCTCCAACGCCACAAGCGCCATAACTACTCCTACAACCCTCAGATTAGAGACCTCAAGCTCTTTGCTAAAAAGATCAATGAGTCTGAGTCCTCTGATGAGAGTGAGTTCTTGGCTGTTCTCGAACAAATCCCACATCCGCCCACTAGGGATAATGCACTTTTGCTTCTGAATAGTTTGAAGCCATGGCCAAAGACCTATCTTTTCTTCAATTGGATCAAGACCCAGAATTTGTTTCCCATGGAAACTATCTTCTATAATGTCACAATGAAGTCTTTGAGGTTTGGGAGACAGTTTCAGCTCATTGAGGAGCTTGCAAATGAAATGATAAGCACCGGTGTTGAGCTTGACAACATCACGTACTCAACCATTATCACCTGTGCCAAAAGGTGTAATTTATTTGACAAGGCTGTGAAGTGGTTTGAGAGGATGTACAAGACGGGTCTGATGCCTGACGAAGTGACCTACTCTGCCATTTTAGATGTTTACGCCAAATTGGGGAAGGTTGAGGAGGTGCTTAGTTTGTATGAAAGAGGAAGAGCTAGTGGGTGGAAGCCTGACCCAATTGCTTTTGCTGTATTGGGTAAGATGTTTGGTGAGGCTGGGGACTATGATGGCATTAGGTATGTTTTGCAAGAGATGAAGTCTCTTGGGGTGCAGCCTAATTTGGTTGTGTACAACACCCTATTAGAGGCAATGGGTAAGGCTGGAAAGCCTGGTTTGGCTAGGAGTTTGTTTGAGGAAATGGTGGGTTCCGGTGTTATCCCAGACGCCAAAACGTTAACGGCATTGGTCAAGATTTATGGCAAGGCAAGGTGGGCTAGAGACGCACTGGAATTATGGGAGAGAATGAGGTCGAATGGCTGGCCAATGGACTTTATTTTGTATAACACACTGTTGAGTATGTGCGCGGATCTTGGGTTGGAGGAGGAGGCGGAGAAGCTCTTTGAGGACATGAAGAAGTCAGAGCATTGCAGGCCGGATAGCTGGAGCTATACTGCCATGCTCAATATATATGGGAGTGGGGGTAATGTTGACAGGGCAATGCAGTTGTTCGACGAAATGTCTGAGCTTGGTGTTCAGATCAATGTCATGGGGTGCACTTGTTTGAGTCAGTGCTTGGGGAGAGCTAGGAGAATTGATGATTTGGTTAAGGTTTTTGAGGTCTCCCTGGAAAGAGGGGTTAAGCCAGATGATAGGTTGTGTGGGTGTTTGCTGTCTGTTGTGTCCTTCTGTGAGGGGGCTGAGGACGCCAATAAAGTCCTTGCTTGTTTACAGCAAGCTAACCCGAAATTGGTTGCTTTTGTCAACCTTCTGGAAGAGAAAATTAGCTTTGAAGCCCTCAAGGAGGAATTCAGAGGCATACTCACTGACACAGCAGTTGAAGCTCGAAGACCATTCTGTAATTGTTTGATAGATATATGCCGAAACAGAAGTCTCCATGAGAGAGCCCATGAGTTGCTCTATCTGGGAACCCTGTATGGGTTGTACCCAGGTCTACATAATAGAACTGCGGACGAGTGGTGTTTGGATGTTAGATCACTGTCTGTTGGCGCAGCACACACTGCATTGGAGGAGTGGATGGGGACTCTATCCAAAATCGTCCAGCGGGAAGAGGCATTGCCGGAGGCATTTTCAGCAAACACTGGAACAGGAACTCATAAGTTCTCTCAAGGGTTGGCTAGTGCCTTTGCTTCACATGTGAAGAAACTCGCTGCACCTTTCACACAGAGTGAAGAAAAAGCTGGTTGTTTTGTGGCAACAAGAGAAGATTTAGTATCATGGGTGCAATCAAGGATTCTATCTCCTGCCGCCGTGGTATGA 2172 0.4678 MGSATLCTGVDVHFSIPHPSHTTKYPNLFSKSTKFSSNTFTIRCNSSSRSPPKPKPKPKPTSSDSEQTNHQNPSLSEQLKPLSKTILTRDHSGQTHLVSKPKSTWINPTKPKPSVLSLQRHKRHNYSYNPQIRDLKLFAKKINESESSDESEFLAVLEQIPHPPTRDNALLLLNSLKPWPKTYLFFNWIKTQNLFPMETIFYNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYSTIITCAKRCNLFDKAVKWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLSLYERGRASGWKPDPIAFAVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEEMVGSGVIPDAKTLTALVKIYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFEDMKKSEHCRPDSWSYTAMLNIYGSGGNVDRAMQLFDEMSELGVQINVMGCTCLSQCLGRARRIDDLVKVFEVSLERGVKPDDRLCGCLLSVVSFCEGAEDANKVLACLQQANPKLVAFVNLLEEKISFEALKEEFRGILTDTAVEARRPFCNCLIDICRNRSLHERAHELLYLGTLYGLYPGLHNRTADEWCLDVRSLSVGAAHTALEEWMGTLSKIVQREEALPEAFSANTGTGTHKFSQGLASAFASHVKKLAAPFTQSEEKAGCFVATREDLVSWVQSRILSPAAVV* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0740 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Vvi2g0740 723 Pfam Pentatricopeptide repeat domain 467 513 IPR002885 -
Vvi2g0740 723 Pfam Pentatricopeptide repeat domain 221 280 IPR002885 -
Vvi2g0740 723 Pfam PPR repeat family 410 453 IPR002885 -
Vvi2g0740 723 Pfam PPR repeat family 337 382 IPR002885 -
Vvi2g0740 723 SMART SMR_2 623 706 IPR002625 -
Vvi2g0740 723 MobiDBLite consensus disorder prediction 41 118 - -
Vvi2g0740 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Vvi2g0740 723 PANTHER OS03G0856100 PROTEIN 30 714 - -
Vvi2g0740 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Vvi2g0740 723 ProSiteProfiles Smr domain profile. 626 709 IPR002625 -
Vvi2g0740 723 NCBIfam pentatricopeptide repeat 411 444 IPR002885 -
Vvi2g0740 723 NCBIfam pentatricopeptide repeat 270 303 IPR002885 -
Vvi2g0740 723 NCBIfam pentatricopeptide repeat 447 479 IPR002885 -
Vvi2g0740 723 NCBIfam pentatricopeptide repeat 235 269 IPR002885 -
Vvi2g0740 723 NCBIfam pentatricopeptide repeat 376 408 IPR002885 -
Vvi2g0740 723 NCBIfam pentatricopeptide repeat 340 374 IPR002885 -
Vvi2g0740 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Vvi2g0740 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Vvi2g0740 723 MobiDBLite consensus disorder prediction 61 118 - -
Vvi2g0740 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Vvi2g0740 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Vvi2g0740 723 SUPERFAMILY HCP-like 250 476 - -
Vvi2g0740 723 Gene3D Tetratricopeptide repeat domain 425 539 IPR011990 GO:0005515
Vvi2g0740 723 Gene3D Tetratricopeptide repeat domain 313 424 IPR011990 GO:0005515
Vvi2g0740 723 Gene3D Tetratricopeptide repeat domain 143 312 IPR011990 GO:0005515
Vvi2g0740 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0740 182 556 Glycosyltransferase AT1G05670 21.485 5.50e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0740 - - vvi:100259066 1420.99