Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0734 ATGGTGAAGATTACCAAGTCCAGCCAGTGCCCAAGAACTTGTATTCACCATGCTACACCTTCACAGAGAAGAGTTCTGGAGGAGCTTCTTGACGGCATCTTGTACACTCTGGAGTTTGTTCCTGATAGGAAAAGCATAGCCATTGATGAAAGACCTTCGGTGAGTGATGAAGACATGGGTTTTGTGGCCTCTCCTTTGCGTTCATTGACACCATCTCGATCTGAATTCAGCTGGTATGAAGATGTGATCCTTGATACATGCTGTCAGAATATTGCTTCAAGTGATGAGATATGGAATTCTGTAGTCGAGCATTTCTTGCAAGACTATGATGAGGAGATCAACAAACAAAATCCATTAGGAGTGAATGGTGAGCTTGCACTTGCTTTTGGTGAGTTGTTGAAGAAATTATGGTCCTCTGGCCGGACACCAGTTGCACCACGTGTATTTAAGGGAAAACTTGCTCGATTGGTTCCTCAGTTCAGTGGGTATAATCAGCATAATTCTCAAGAACTTCTCGCTTTCTTACTGGATGATCTGGAGCTTACATTTGGGAGTGGGAACTGGGAAGACGCTTGGTTAAGCTTTGTGCAGGATTTAATCTGGTAA 606 0.4356 MVKITKSSQCPRTCIHHATPSQRRVLEELLDGILYTLEFVPDRKSIAIDERPSVSDEDMGFVASPLRSLTPSRSEFSWYEDVILDTCCQNIASSDEIWNSVVEHFLQDYDEEINKQNPLGVNGELALAFGELLKKLWSSGRTPVAPRVFKGKLARLVPQFSGYNQHNSQELLAFLLDDLELTFGSGNWEDAWLSFVQDLIW* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0734 201 Gene3D Cysteine proteinases 85 190 - -
Vvi2g0734 201 Pfam Ubiquitin carboxyl-terminal hydrolase 107 182 IPR001394 GO:0004843|GO:0016579
Vvi2g0734 201 SUPERFAMILY Cysteine proteinases 104 190 IPR038765 -
Vvi2g0734 201 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 102 180 - -
Vvi2g0734 201 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 73 201 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0734 Vvi-Chr2 6993896 6994717 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0734 - - vvi:100259769 139.428