Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0732 ATGGCTGGGATGTCCAAGCAGGACCCATCACCGGCCTTTGCAGAAACAGTGGAGGAGATCATGAGAATCTACAGATCACTACCACCAAGACCCAAAATTGAGGAGGTTGAAGCAGCCATGACTGTTATCAGGACAGCGGACTGTGAAGAGCAGAAGAGGCTCGAGGAGGTTGCAAGGCAAGAGGTCCCCCAGGGGGTCCCACCTGAGCTCTTCTCTGTTCTGCAGCAGGCGAGGAAGACCATGGTGCTGTTTCAGTGCCATGAGGAGAGGGAAGAGGCTCTTCACTTGGTCGAGAGGAATAAGCTGTTCAATACATTTGATGAGCTCATTCAGAAAGCTTCTGAGGTGGTTTCCGGGGGTGTCCCGATTGAGAAGCAGATTGATTTGGGTGACCCAGTTGGGAAAAGTGGGAGAAAAGATGTGATCAGTGTTGAGAGTTTGATTAAGAGGGGAGAAGATGAGGAATCGGGGGCAGATGGTTTCAAGGGTTTGGTGAGGAGTTCTTCCGCGAAGGCCATTTTCGTTTCAGGTGAGGACGATACCGAGAAGTTCAATCTCATGAAGGTGGCAGCCCTTATTGAAAAAACTGCTAAAATCAAAGCAGGGGTTCTTGATCTTCAAGGCAAGTTGATGGAAAAGATTGAGTGGCTTCCCACATCGATTGGCAAATTATCTGATATCACTGAATTGAACTTGTCTGAAAACCGAATTATGGCTCTCCCATCCACCATGAGTGGCCTCAGAGCCCTAACAAAGCTTGATGTCCACTCAAACCAACTGATCAACCTTCCAGATTCAATTGGGGAATTGGTGAACCTAGCTGATCTCGATCTCCATGCAAACAGATTAAGGTCACTGCCAGCTTCTTTTGGGAATCTGGTGAACCTCATCAATCTCAATTTGAGTTCAAATCAATTCACCCATTTGCCAGACAACATTGGGAGTCTAACAAGCTTGAAGAGACTGAATGTGGATACAAATGAGCTCGAAGAAGTTCCTTATACAATTGGATCATGCACATCACTTTTGGAGCTGAGATTGGATTTCAATCAATTAAGAGCTCTTCCTGAGGCTGTTGGAAAGCTTGAATGCTTGGAGATTCTTACGTTGCATTATAACAGAATCAAAGGGCTGCCAACAACAATTGGTAATCTTTCCAATTTGAGGGAACTTGATGTTAGCTTCAATGAACTTGAATCAGTACCCGAAAACCTCTGCTTTGCGGTCAAGCTCAAGAAATTGAATGTGGGGAAGAACTTTGCAGACTTGAGAGCCTTGCCAAGATCAATAGGGAATCTTGAGATGCTTGAAGAGTTGGACATAAGTGACTGTCAAATAAGAATGCTACCGGATTCTTTTCGGTTCCTGTCTAAATTGAGAGTTCTTCGTGCAGATGAGACTCCATTGGAGGTGCCACCAAGGGAAGTAACTAAACTTGGGGCTCAGGAAGTTGTTCAGTACATGGCTGATCTGACCGCCAAGTGGGAGGCAAGACCCCTATCCTCAAAGAAGAAGGGGTTCTGGTTCTGGGTTTGCTCGATATTCAGAGCTAGAACCAAGAGGACCACTGACAGCAAGGAATCACAAAAGCTTGATGAGTGA 1602 0.4594 MAGMSKQDPSPAFAETVEEIMRIYRSLPPRPKIEEVEAAMTVIRTADCEEQKRLEEVARQEVPQGVPPELFSVLQQARKTMVLFQCHEEREEALHLVERNKLFNTFDELIQKASEVVSGGVPIEKQIDLGDPVGKSGRKDVISVESLIKRGEDEESGADGFKGLVRSSSAKAIFVSGEDDTEKFNLMKVAALIEKTAKIKAGVLDLQGKLMEKIEWLPTSIGKLSDITELNLSENRIMALPSTMSGLRALTKLDVHSNQLINLPDSIGELVNLADLDLHANRLRSLPASFGNLVNLINLNLSSNQFTHLPDNIGSLTSLKRLNVDTNELEEVPYTIGSCTSLLELRLDFNQLRALPEAVGKLECLEILTLHYNRIKGLPTTIGNLSNLRELDVSFNELESVPENLCFAVKLKKLNVGKNFADLRALPRSIGNLEMLEELDISDCQIRMLPDSFRFLSKLRVLRADETPLEVPPREVTKLGAQEVVQYMADLTAKWEARPLSSKKKGFWFWVCSIFRARTKRTTDSKESQKLDE* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0732 533 SMART LRR_bac_2 408 429 - -
Vvi2g0732 533 SMART LRR_bac_2 270 289 - -
Vvi2g0732 533 SMART LRR_bac_2 385 404 - -
Vvi2g0732 533 SMART LRR_bac_2 247 266 - -
Vvi2g0732 533 SMART LRR_bac_2 293 312 - -
Vvi2g0732 533 SMART LRR_bac_2 316 335 - -
Vvi2g0732 533 SMART LRR_bac_2 224 243 - -
Vvi2g0732 533 SMART LRR_bac_2 433 452 - -
Vvi2g0732 533 SMART LRR_bac_2 362 381 - -
Vvi2g0732 533 SMART LRR_bac_2 339 358 - -
Vvi2g0732 533 Pfam Leucine Rich Repeat 436 456 IPR001611 GO:0005515
Vvi2g0732 533 Gene3D Ribonuclease Inhibitor 180 487 IPR032675 -
Vvi2g0732 533 Pfam Leucine rich repeat 341 398 IPR001611 GO:0005515
Vvi2g0732 533 Pfam Leucine rich repeat 272 329 IPR001611 GO:0005515
Vvi2g0732 533 SUPERFAMILY L domain-like 204 473 - -
Vvi2g0732 533 ProSiteProfiles Leucine-rich repeat profile. 295 316 IPR001611 GO:0005515
Vvi2g0732 533 SMART LRR_typ_2 385 408 IPR003591 -
Vvi2g0732 533 SMART LRR_typ_2 362 384 IPR003591 -
Vvi2g0732 533 SMART LRR_typ_2 340 361 IPR003591 -
Vvi2g0732 533 SMART LRR_typ_2 433 455 IPR003591 -
Vvi2g0732 533 SMART LRR_typ_2 270 292 IPR003591 -
Vvi2g0732 533 SMART LRR_typ_2 316 339 IPR003591 -
Vvi2g0732 533 SMART LRR_typ_2 247 268 IPR003591 -
Vvi2g0732 533 SMART LRR_typ_2 224 246 IPR003591 -
Vvi2g0732 533 SMART LRR_typ_2 293 315 IPR003591 -
Vvi2g0732 533 FunFam Plant intracellular Ras-group-related LRR protein 4 183 491 - -
Vvi2g0732 533 ProSiteProfiles Leucine-rich repeat profile. 387 408 IPR001611 GO:0005515
Vvi2g0732 533 PANTHER - 204 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0732 Vvi-Chr2 6975345 6977444 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0732 217 462 Receptor kinase-like Gene Family AT3G11080 32.014 5.38e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0732 - - vvi:100257457 1028.47