Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0715 ATGGGCGTTAGGTTCAAACCCTCCCACCCAACTGTCCGCTTATCTTCACTCTCTCTTGAAAAATTCCTCAAATCCCGCAAAAACCTCTTTAAAGCCCCTCCAAGACTCTGGTCCGACCATGGCCATGGGCTTCCAGAAGAAGACGACCAACCACTCCCTATCCTAAAGCTAAGCCACCCCATTTTGCGCACCTTAGAATCATGCTGCGGTTCAACGAAAGAGTTCAACCAAATCCACACCCAACTCATTGTCTCCGGCCTCCTTCAACAACCTCTAGCAGCGGGCCGAGCTGTCAAGACGCTTTGTTCTTTTCCGGATTCTGTCCAACATGCGGTTTCGCTGTTTGAAGGTCTGGAAGAGCCGGATGCGTTTATATGTAACACCATTATGAGAACCTATGTGAATGTGAATGATCCATATACTGCTCTTGGGTTTTACTATGAGCAAATGGTTCGTAAATGTGTTGCTCCCAATCATTACACCTTCCCACTTTTGGTGAAGGTTTGCTGGGAGATTGGGTCGATTGGAGACGGGGAAAAGATCCATGCCCGCATATTGAAGTTTGGGTTTGAATTGGATTTGTTTGTTCGAAACTCCTTGATCCATATGTATTCAGTTTGTGGGAGAATTGGGGATGCAAGAGCAATGTTTGAGGTGTGTTCTATATCGGATTTGGTGACTTGGAATTCCATGATTGATGGGTATGTAAAGAATGGGGAGATCGGTGCTGCTCGTGAACTTTTTGAGGAAATGCCTGAGAGAGACCTATTTAGTTGGAATTCGATGATTGCAGGGTATGTTGGAAATGGAGACATGACGGCTGCGGAAGACTTGTTCAACAAGATGCCATTTAGAGATATTGTTTCCTGGAACTGTATGATTGACGGATATGCTCAGGTTCAGAATATGGAAATTGCTTGTGAGCTTTTTAATTGGATGCCATATCGAAATGTAGTTTCTTGGAATATCATGTTGGCTCTTTATGTGCGGATCAAAGACTATGATGAGTGTTTGCGCATGTTTGATAAGATGATGGGGGAGACTATGCCAAACGAGGCTACCCTTGTGAGTGTCTTGACTGCTTGTGCACACTTAGGGAGGCTTGATAGGGGCAAATGGATTCATTCTTACATTAAAAATAATAGGGTGATTGAACCTGATGTGTTACTTTCAACTGCGCTCTTGACAATGTATGCAAAGTGTGGAGCCATGGATTTGGCTAGAGATGTGTTTGACAAGATGTCCAACAGAAGTGTTGTATCTTGGAATTCGATGATTATGGGATATGGCATGCATGGCCAGGCAGATAAAGCCCTAGAAATGTTCTTGGATATGGAAAAGAGAGGTCCAATGCCAAATGATGCTACTTTTATATGTGTTTTAAGTGCATGTGCACACTCTGGAATGATTTTGGAGGGTTGGTGGTACTTTGATCTAATGAGGCGGGCTTATAAGATCGAACCGAAGGTTGAGCACTATGGTTGCATGGTTGATCTTCTTGGGCGGGCAGGTTTGATGAAAGATTTGGAAGAGCTTATAAGGAAGATGCCGATGGAGGGGGGAACTGCCTTATGGGGAGCACTACTTTCTGCTTGTAGGACTCACTCAAATTCAGAGCTTGCAGAGATCGTGGCCAAAAGGCTAATTGAGTTGGAACCAAGGGATATTGGGCCCTACTTGCTGTTATCAAATATATATGCTGCAGAAGGAAAATGGGACGATGTAGAAATTGTCAGAAAGATGATGAAGGAAAGGGGTTTAACAAAAACAACAGGGTCAAAGTAG 1785 0.4398 MGVRFKPSHPTVRLSSLSLEKFLKSRKNLFKAPPRLWSDHGHGLPEEDDQPLPILKLSHPILRTLESCCGSTKEFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQHAVSLFEGLEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGSK* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0715 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Vvi2g0715 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Vvi2g0715 594 Gene3D Tetratricopeptide repeat domain 373 444 IPR011990 GO:0005515
Vvi2g0715 594 FunFam Pentatricopeptide repeat-containing protein 223 285 - -
Vvi2g0715 594 Pfam PPR repeat 492 520 IPR002885 -
Vvi2g0715 594 Pfam PPR repeat 392 417 IPR002885 -
Vvi2g0715 594 Pfam PPR repeat 257 283 IPR002885 -
Vvi2g0715 594 Pfam PPR repeat 226 255 IPR002885 -
Vvi2g0715 594 Pfam PPR repeat 319 346 IPR002885 -
Vvi2g0715 594 Pfam PPR repeat 198 218 IPR002885 -
Vvi2g0715 594 FunFam Pentatricopeptide repeat-containing protein 286 381 - -
Vvi2g0715 594 Pfam PPR repeat family 286 318 IPR002885 -
Vvi2g0715 594 Pfam PPR repeat family 418 465 IPR002885 -
Vvi2g0715 594 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 234 592 IPR046960 GO:0003723|GO:0009451
Vvi2g0715 594 NCBIfam pentatricopeptide repeat 288 311 IPR002885 -
Vvi2g0715 594 NCBIfam pentatricopeptide repeat 226 255 IPR002885 -
Vvi2g0715 594 NCBIfam pentatricopeptide repeat 319 345 IPR002885 -
Vvi2g0715 594 NCBIfam pentatricopeptide repeat 257 288 IPR002885 -
Vvi2g0715 594 NCBIfam pentatricopeptide repeat 420 453 IPR002885 -
Vvi2g0715 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Vvi2g0715 594 Gene3D Tetratricopeptide repeat domain 222 285 IPR011990 GO:0005515
Vvi2g0715 594 Gene3D Tetratricopeptide repeat domain 62 221 IPR011990 GO:0005515
Vvi2g0715 594 Gene3D Tetratricopeptide repeat domain 286 372 IPR011990 GO:0005515
Vvi2g0715 594 FunFam Pentatricopeptide repeat-containing protein 391 594 - -
Vvi2g0715 594 FunFam Pentatricopeptide repeat-containing protein At5g66520 62 221 - -
Vvi2g0715 594 Pfam E motif 535 592 IPR046848 -
Vvi2g0715 594 Gene3D Tetratricopeptide repeat domain 445 593 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0715 Vvi-Chr2 6708452 6711471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0715 106 592 Glycoside Hydrolase AT3G49170 32.335 2.57e-87 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0715 - - vvi:100267844 1216.45