Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0707 ATGACGGTTTCTTCTGGTGAAAATTCTGCTGATAGCAAATGTTCACTATCTGGACTTGCTCCTCTTGAAGCGGTGCTGTTTGATATTGATGGAACTCTATGTGATTCAGATCCTCTGCACTACTATGCCTTCCGAGAATTGCTTCTGCAGATAGGCTATAATGGTGGAGTTCCAATAACGGAGGAATTCTTCATTGAGAATATTGCTGGCAAACATGGTGATGATGTCGCTAGGGGCATCTTCCCTGACTGGGACCTCGAGAAGGGCTTAAAATTCATGGATGATAAGGAAGCTTTGTTTCGAAAATTTGCGAAAGAACAAGTGAAGCCTTTAGATGGCCTACACAAGATAAGGAAATGGATTGAAGATCGAGGCTTGAAACGGGCTGCAGTTACTAATGCTCCAAGACCAAATGCTGAACTCATGATCTCACTTCTCGGCCTCTCTGATTTCTTCCAGGCAGTTGTTATTGGCAGCGAATGTGATCGTGCCAAACCATTCCCAGACCCCTACTTGAAGGCTCTTGAAGTCCTCCAAGTGTCAAAGGATAGCACATTCATCTTCGAGGATTCTGCTTCCGGGATTAAGGCTGGGGTGGCTGCTGGAATGCCTGTTGTTGGTTTAACTACCAGGAATCCTGAAAGCTTGTTGATGGAAGCAAAACCCGTCTTTCTCATACGTGATTATGATGATCCCAAATTGTGGGCGGCTTTGGCAGAGCTTGATCAGAAGGGAGCTCCAGGAGCAGCAGCTACTGCTTAA 762 0.4567 MTVSSGENSADSKCSLSGLAPLEAVLFDIDGTLCDSDPLHYYAFRELLLQIGYNGGVPITEEFFIENIAGKHGDDVARGIFPDWDLEKGLKFMDDKEALFRKFAKEQVKPLDGLHKIRKWIEDRGLKRAAVTNAPRPNAELMISLLGLSDFFQAVVIGSECDRAKPFPDPYLKALEVLQVSKDSTFIFEDSASGIKAGVAAGMPVVGLTTRNPESLLMEAKPVFLIRDYDDPKLWAALAELDQKGAPGAAATA* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0707 253 Gene3D Putative phosphatase; domain 2 37 106 IPR023198 -
Vvi2g0707 253 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 121 134 IPR006439 -
Vvi2g0707 253 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 170 190 IPR006439 -
Vvi2g0707 253 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 22 33 IPR006439 -
Vvi2g0707 253 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 152 168 IPR006439 -
Vvi2g0707 253 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 23 244 - -
Vvi2g0707 253 SFLD Haloacid Dehalogenase 22 230 - -
Vvi2g0707 253 SUPERFAMILY HAD-like 20 240 IPR036412 -
Vvi2g0707 253 CDD HAD_BPGM-like 24 210 - -
Vvi2g0707 253 Pfam Haloacid dehalogenase-like hydrolase 25 207 IPR041492 -
Vvi2g0707 253 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 22 230 - -
Vvi2g0707 253 Gene3D - 23 231 IPR023214 -
Vvi2g0707 253 NCBIfam HAD-IA family hydrolase 97 207 IPR006439 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0707 Vvi-Chr2 6658119 6661725 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0707 - - vvi:100252262 470.314