Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0703 ATGGCTCCAGTTTCTGCTCTGGCCAAATACAAGCTTGTCTTCTTAGGGGATCAGTCTGTCGGGAAAACCAGCATCATCACTCGATTCATGTACGACAAATTCGATAATACCTATCAGGCTACAATTGGTATTGATTTCCTATCAAAGACCATGTATCTTGAAGATCGAACCGTTCGTCTGCAGTTGTGGGATACAGCCGGGCAGGAAAGATTCAGGAGTCTCATTCCGAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAGTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTGAGAGAGGTAGTGATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAGGCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCATGTTCATTGAAACAAGTGCCAAAGCTGGCTTCAATATAAAGGCACTGTTTCGGAAAATTGCAGCAGCTTTACCAGGAATGGAAACACTTTCTTCAGCAAAGCAAGAAGACATGGTTGATGTGAATCTGAAGTCGTCAAGTGGCAGTGCATCACAGTCCCAAACTCAGGCACGTGGATGCTCTTGTTGA 627 0.4386 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQEDMVDVNLKSSSGSASQSQTQARGCSC* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0703 208 PANTHER RAS-RELATED PROTEIN RAB 10 181 - -
Vvi2g0703 208 SMART ran_sub_2 15 207 - -
Vvi2g0703 208 ProSiteProfiles small GTPase Ras family profile. 5 208 IPR001806 GO:0003924|GO:0005525
Vvi2g0703 208 ProSiteProfiles small GTPase Rho family profile. 3 179 - -
Vvi2g0703 208 CDD Rab6 10 170 - -
Vvi2g0703 208 Gene3D - 6 206 IPR027417 -
Vvi2g0703 208 MobiDBLite consensus disorder prediction 189 208 - -
Vvi2g0703 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 177 IPR027417 -
Vvi2g0703 208 PRINTS Transforming protein P21 ras signature 113 126 - -
Vvi2g0703 208 PRINTS Transforming protein P21 ras signature 10 31 - -
Vvi2g0703 208 PRINTS Transforming protein P21 ras signature 33 49 - -
Vvi2g0703 208 PRINTS Transforming protein P21 ras signature 51 73 - -
Vvi2g0703 208 PRINTS Transforming protein P21 ras signature 148 170 - -
Vvi2g0703 208 NCBIfam small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Vvi2g0703 208 ProSiteProfiles small GTPase Rab1 family profile. 5 208 - -
Vvi2g0703 208 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
Vvi2g0703 208 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Vvi2g0703 208 SMART ras_sub_4 7 173 - -
Vvi2g0703 208 FunFam Probable Ras-related protein Rab-6A 6 203 - -
Vvi2g0703 208 SMART rab_sub_5 10 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0703 Vvi-Chr2 6621379 6628822 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0703 10 168 EF-hand Containing Proteins AT3G63150 23.636 7.53e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0703 K07893 - vvi:100242004 395.971