Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0696 ATGCAGCTTCCTAGAAGGAAGCTCACACTGGAAAGGGTGGAAATATTGCTAGAAATGGAGGTTGATGAGGGTGGAGTGCAGTTTGAGGACTACTTCCCTTCCATGATGGAGGGTTTGGGAGCTGAGGGCTTCATCTTGGAGCTCTGCAACGGGTTTCACTTGCTGATGGATGTGGAAAAAGGGCTGATCACTTTGGAGAGCTTGAGGAGGAGCACCATAGAGTTAGGGTTGCAGGAGATGGGAGATGATGAGCTTGTGTGGATGCTGAGTGAGGGAGATTTGGATGGAGATGGGGCTCTCAATCAGACCGAGTTTTGCATTCTCATGCTGAGATTGAGTCCGGGGTTGATGGAGGGACCCAAGCAGTGGGTGGAGGAGATGTGTACATGA 390 0.5077 MQLPRRKLTLERVEILLEMEVDEGGVQFEDYFPSMMEGLGAEGFILELCNGFHLLMDVEKGLITLESLRRSTIELGLQEMGDDELVWMLSEGDLDGDGALNQTEFCILMLRLSPGLMEGPKQWVEEMCT* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0696 129 SUPERFAMILY EF-hand 42 118 IPR011992 -
Vvi2g0696 129 Gene3D - 25 129 - -
Vvi2g0696 129 Pfam EF-hand domain pair 59 111 IPR002048 GO:0005509
Vvi2g0696 129 PANTHER CALCIUM-BINDING PROTEIN KIC 26 128 IPR044205 GO:0005509
Vvi2g0696 129 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Vvi2g0696 129 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0696 Vvi-Chr2 6541659 6542208 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0696 27 127 EF-hand Containing Proteins AT5G54490 56.863 7.43e-36 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0696 K24345 - vvi:100266004 262.692