Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0679 ATGGATTCACAACCCAACAACCTCTACGACACCGCTTCCCAACCCGACACTGGCAACGACGCCTACACGTTCATCGAATTCAACACTCAAGGCGAGGACTTTGACTACCCTGACTTCCGCGACCCGATTCGCCCCTCCGCCTGGCCCACGCCTTCCGATTCGATATCCGACGCAGCTGACCACCAGTCCGATGCTTCTCCTGTCTCCGCCGCCCCCGGCAGCGCCACCAAGGCCCGCGGCGCCGCCGGCAGCAGCAGCAGCAGCCAGGCAGCCGTGGACGCCTTGGCTGCGGGAATGAGCGGATTAAACTTTGAGGAGACTGGGGATGATGATAATTATGAGTACGGAAAAGGGGATTTCACGGAGCACGCGTGCAGGTATTGCGGAGTTCAGAATCCTGCGTGCGTCGTGCGGTGTAATGTGCCGTCGTGCCGCAAGTGGTTTTGTAATTCACGCGGGAATACGTCCGGTTCGCATATTGTGAATCACCTGGTTCGAGCCAAACACAAGGAAGTTTGTCTTCATAAAGATAGTCCTCTTGGAGAAACAATCCTTGAATGCTACAACTGTGGATGCCGAAATGTGTTTCTTCTTGGATTTATATCTGCCAAGACAGAAAGTGTTGTTGTTCTGCTTTGTAGAGAACCTTGCCTGAGTGTTAATGCATTGAAGGACATGAACTGGGACCTGAGTCAGTGGTGCCCTCTTATTGATGATAGGTGTTTCTTGCAGTGGCTTGTTAAGATCCCATCCGAACAGGAGCAATTGAGGGCACGGCAAATCAGTGCCCAACAAATAAATAAGGTAGAAGAACTTTGGAAGACAAATCCTGATGCTTCCCTGGAAGATCTTGAGAAGCCTGGTGTGGATGATGAACCCCAGCCCATAGCCTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCACTTATCAAGCTTGAGGCAGACTATGATAAAATGATGAAAGAATCTCAAAGCAAAGACAACGTTACAATTCGCTGGGATATTGGTCTTAACAAGAAGCGTATTGCATATTTCGTTTTTCCAAAGGAAGACAATGAGTTGCGTCTTGTACCTGGTGATGAGTTGCGGCTGCGTTATTCAGGAGATGCAGCTCATCCAGCATGGCAGTCGGTTGGGCATGTGATCAAGCTAACTGCACAAGAGGAGGTTGCACTTGAGCTTCGTGCCAGTCAGGGAGTTCCTGTTGATGTGAATCATGGTTTCAGTGTTGACTTTGTGTGGAAGAGTACAAGCTTTGATCGGATGCAGGGGGCCATGAAAACTTTTGCAGTGGATGAAACTAGTGTCAGTGGATACATTTACCATCACTTGTTGGGTCATGAAGTTGAGGTTCAGATGGTTCGAAATACGCTCCCTCGTCGATTTGGCGCACCAGGCCTTCCAGAGCTCAATGCTTCTCAAGTTTTTGCTGTAAAGAGTGTACTTCAAAAGCCAATAAGTTTGATTCAAGGTCCACCTGGCACTGGGAAAACTGTAACTTCAGCAGCAATTGTATATCACATGGCTAAACAAGGCCAGGGGCAGGTTTTGGTTTGTGCTCCAAGTAATGTGGCTGTAGACCAACTAGCTGAAAAGATAAGTGCCACTGGGTTAAAGGTCGTTAGGCTCTGTGCAAAATCGAGGGAAGCTGTTAGTTCTCCTGTTGAGCATTTAACCCTTCATTATCAGGTTCGACATCTTGATACGTCGGAAAAGAGTGAGCTTCATAAGCTACAGCAACTGAAGGATGAACAAGGGGAGTTGTCTAGCAGTGATGAGAAAAAATACAAAGCTCTGAAGCGGGCGACCGAGAGGGAGATATCTCAAAGTGCTGATGTCATTTGTTGCACATGTGTTGGTGCTGGGGATCCTCGGTTGGCCAATTTTAGATTCCGTCAGGTGCTTATTGATGAGTCTACTCAGGCTACTGAACCTGAGTGCCTCATTCCTTTGGTTCTTGGTGTGAAGCAGGTTGTCCTTGTTGGTGACCATTGCCAGCTTGGTCCAGTCATCATGTGTAAGAAAGCTGCACGGGCTGGGCTAGCTCAGTCTCTGTTTGAGCGTCTTGTGCTTCTGGGTGTGAAACCAATTAGATTGCAGGTTCAATACCGTATGCACCCATCCCTGTCAGAATTTCCTTCCAATAGCTTCTATGAAGGTACACTCCAAAATGGAGTGACCATCAATGAAAGGCAATCGTCTGGCATTGATTTTCCTTGGCCTGTGCCAAATCGACCTATGTTCTTTTATGTCCAGATGGGACAAGAGGAGATCAGTGCTAGCGGAACATCCTATCTGAATAGGACTGAAGCTGCAAATGTTGAAAAAATTGTAACTACTTTTTTAAGAAGTGGTGTAGTTCCCAGTCAGATTGGGGTGATAACACCATATGAGGGACAGAGAGCATATATTGTGAATTATATGTCGAGAAATGGTGCTTTAAGGCAACAACTTTATAAAGAAATTGAGGTTGCGAGTGTAGATTCATTCCAGGGAAGGGAAAAAGATTACATTATTTTGTCTTGTGTGAGGAGTAATGAGCATCAGGGCATTGGGTTCCTTAATGATCCTCGCAGGCTTAATGTTGCACTAACACGTGCTCGTTATGGTATTGTCATCCTGGGAAATCCTAAAGTTCTTAGTAAACAGCCGCTATGGAATAGCTTGTTGACACACTACAAGGAGCATGAGTGCTTGGTTGAAGGTCCTCTGAATAACCTGAAGCAGAGTATGGTTCAATTTCAAAAGCCAAAAAAGATCTACAATGATCGTCGACTTTTCTTCGGAGGTGGCCCTGGGATAGTGCCTAATGACAATTTTGGAACTGTTACTTCGTCAAGCCCCAGTGCTGATAGAAGAAGCAGTCGTGGCAGGGGTTCATATATGCCATCTGGCCCACCCAATGGTACTCATAAACCTGGAGTGCATCCGGCTGGGTTCCCAATGCCTCGTGTCCCCCTTCCTCCATTTCATGGTGGTCCCCCATCTCAACCCTATGCCATTCCAACTCGTGGAGCTGTACATGGACCTGTTGGAGCTGTTCCTCATGTCCCTCCACCAGGAAGCCGGGGGTTTGGTGCTGGGCGTGGCAATGCTGGTGCTCCTATTGGCAGTCATCTTCCACACCAGCAAGGTTCTCAGCAAGCTGTTGGGAATCTTGGCTCTACTTTTAACTTTCCTGCTCTGGAGAATCCAAATAGCCAGCCATCCGTGGGTGGTCCATTATCTCAACCCGGATTTGTTACTAATATGCCAGTACAAGGTCCGAGCCAAACATTTCGTGATGGATTTTCTATTGGGGGCATGTCGCAGGATTTCTTGGGTGATGATTTTAAAAGCCAGGGTTCACATGTACCTTATAATGTTGCAGACTTCTCCACACAGGCTTCTCAAAGTGGGTATACCCTTGATTATGCTACACAAGGAGCGCAGGCTGGGTTTCCAGGAAGTTTCCTAAACCAGAACTCTCAAGCTGGATATACTCGATTTGGTACTGGAAATGATTTCATGTCTCAGGACTACATGGCTCACGGATCACAAGGTCTGTTTACACAGGTTGGCTTCAATGACCCATCCCAAGATGATGCCTCCCAGAGCCATTTTGGTGTGGCCAATCCCAACCCCCTTCAATCGCAGGGTTTGATGAATCCTCTCTACTCCCAACCCTTTGCCCATTACAACACACAGCCACTAAATTTGCAGGCTCCACAGCAGCAGCAGCAACAGCAACAGCAAACACCTCCCCAGCAGGGCCAGAGCTCCCAAAACCAGAAACTCCACTACAATGGTTGA 3804 0.4753 MDSQPNNLYDTASQPDTGNDAYTFIEFNTQGEDFDYPDFRDPIRPSAWPTPSDSISDAADHQSDASPVSAAPGSATKARGAAGSSSSSQAAVDALAAGMSGLNFEETGDDDNYEYGKGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQPIALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDNFGTVTSSSPSADRRSSRGRGSYMPSGPPNGTHKPGVHPAGFPMPRVPLPPFHGGPPSQPYAIPTRGAVHGPVGAVPHVPPPGSRGFGAGRGNAGAPIGSHLPHQQGSQQAVGNLGSTFNFPALENPNSQPSVGGPLSQPGFVTNMPVQGPSQTFRDGFSIGGMSQDFLGDDFKSQGSHVPYNVADFSTQASQSGYTLDYATQGAQAGFPGSFLNQNSQAGYTRFGTGNDFMSQDYMAHGSQGLFTQVGFNDPSQDDASQSHFGVANPNPLQSQGLMNPLYSQPFAHYNTQPLNLQAPQQQQQQQQQTPPQQGQSSQNQKLHYNG* 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0679 1267 MobiDBLite consensus disorder prediction 942 958 - -
Vvi2g0679 1267 CDD SF1_C_Upf1 709 898 IPR047187 -
Vvi2g0679 1267 Gene3D - 708 919 IPR027417 -
Vvi2g0679 1267 FunFam Regulator of nonsense transcripts 1 708 919 - -
Vvi2g0679 1267 Pfam AAA domain 686 881 IPR041679 -
Vvi2g0679 1267 Pfam AAA domain 576 676 IPR041677 GO:0004386
Vvi2g0679 1267 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 117 276 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Vvi2g0679 1267 MobiDBLite consensus disorder prediction 1190 1267 - -
Vvi2g0679 1267 MobiDBLite consensus disorder prediction 49 70 - -
Vvi2g0679 1267 Pfam RNA helicase UPF1, 1B domain 328 417 IPR040812 -
Vvi2g0679 1267 MobiDBLite consensus disorder prediction 1 86 - -
Vvi2g0679 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 903 IPR027417 -
Vvi2g0679 1267 Gene3D - 329 417 - -
Vvi2g0679 1267 CDD DEXXQc_UPF1 473 708 - -
Vvi2g0679 1267 MobiDBLite consensus disorder prediction 1027 1052 - -
Vvi2g0679 1267 MobiDBLite consensus disorder prediction 941 987 - -
Vvi2g0679 1267 PANTHER DNA2/NAM7 HELICASE FAMILY 227 1070 IPR045055 -
Vvi2g0679 1267 CDD 1B_UPF1-like 329 416 IPR040812 -
Vvi2g0679 1267 MobiDBLite consensus disorder prediction 1 26 - -
Vvi2g0679 1267 Pfam RNA helicase (UPF2 interacting domain) 123 276 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Vvi2g0679 1267 FunFam regulator of nonsense transcripts 1 homolog 329 417 - -
Vvi2g0679 1267 Pfam Type III restriction enzyme, res subunit 477 552 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vvi2g0679 1267 Gene3D - 437 707 IPR027417 -
Vvi2g0679 1267 Gene3D - 559 611 - -
Vvi2g0679 1267 CDD ZBD_UPF1-like 124 246 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Vvi2g0679 1267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 482 614 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0679 Vvi-Chr2 6288109 6317928 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0679 K14326 - vvi:100264343 2437.53